Array 1 17379-18340 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJRC01000002.1 Staphylococcus pseudintermedius strain MAD647 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 17379 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 17449 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 17521 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 17594 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 17664 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 17737 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 17808 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 17879 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 17951 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 18023 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 18095 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 18166 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 18235 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 18306 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 99.0 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 27065-27386 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJRC01000002.1 Staphylococcus pseudintermedius strain MAD647 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 27065 36 100.0 35 .................................... CTTCTAAGACGCGATATGATTCTAATTGGTCTTCA 27136 36 100.0 38 .................................... GATATACTCCTTTACCATGTATTAATTCTGGACCACTA C [27151] 27211 36 100.0 33 .................................... CATATTCGATCGTGTATATCAAAACTTTATGCA 27280 36 91.7 37 ................................G.TC TCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAA 27353 34 66.7 0 A.......T--..T.......T..A.A.AA..T.T. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 91.7 36 TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : GAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAAA # Right flank : TAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTACCATCTAGAAAATGTAATTTTTTAAAAATCTGAAGATAAAGTAGATTACTTTGTGAGTTTTCATGTTAA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 35719-36839 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJRC01000003.1 Staphylococcus pseudintermedius strain MAD647 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 35719 36 100.0 36 .................................... CGTGAACAAAGTAAAGAAAGAAACACCGAAAACTTC 35791 36 100.0 36 .................................... ATTTTCTATCTTACAATTTAATAATAACATGAAGCG 35863 36 100.0 36 .................................... GATTTTAAACGAGTTTCTATATATAATTCATCTAAA 35935 36 100.0 36 .................................... ATCCAAGTCATCATCGCCAATCATAAAATAATCCTC 36007 36 100.0 36 .................................... TTTTATTTTTATTAAACATTTCCGCTTTCTCAAGAG 36079 36 100.0 38 .................................... ATAATTACTGTCATCAATGTCTCGTAAGTACATACTAT 36153 36 100.0 36 .................................... CGTTCATTTCGATATTGTTTATTACGTTTTTCATTT 36225 36 100.0 38 .................................... CGTACAACCATTTTTAAATGTTGCCCAACCCGTTTTTA 36299 36 100.0 34 .................................... AGCTAACATATGAAATGCATAAATAATTTCTTGT 36369 36 100.0 36 .................................... CATATTTTCGTACCCTTTATAAGTTTTAAAGTTGTC 36441 36 100.0 35 .................................... TGTTCTCCTCTTTGTCTATGTGTTTTCTTTATATT 36512 36 100.0 35 .................................... TGCTACCTTCCGCTCTGTATGTTTTATTCATGTCT 36583 36 100.0 36 .................................... TTCTTTAACAGCTTCATCTGACAAATCGTTATACGG C [36596] 36656 36 100.0 36 .................................... TTACTCATTTGTGATTTGAATGCGCCTCTTAATTCT TA [36678] 36730 36 88.9 38 G...G....A.T........................ CGTCGAAAGTATCTTCAATATTTAAAGTAAAGTTTGTC 36804 36 88.9 0 ....G......A....G............T...... | ========== ====== ====== ====== ==================================== ====================================== ================== 16 36 98.6 36 AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Left flank : GTGAAAACTGGAGATGAAGTCAAATGTGTAACGTATAGTTGAAAGGTGGTAATACAGCGGTTTTGGCAATTTAATAGGTGATGGAAATGTCAAGGCACAATGCATATTCCGATTAATTTTTTAAATACGAAGAAGTTAGGAATAAGCAAATATTGAAGTTTGCACAGCTACAGTATATTCGGCCAGATGTTAATTATTAAAAAGAAAGTTCCAGTATTCAAAGGAAGAGTAGAAAATGTATGATAATTATCATTAACAAGACTTCGTTTAATTGAAAGCGTTTAAAAAATATAGAAGAAAGTAATCATGTGAATAGGATATGAATTAAGAAAGGTTTATTGTATAATATCTATGATATGTTTTGAAATATTTATAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATAGTGGTATTTTTAATATTAAATTTGTCTTATTTCTAGACATGATTAAAGTATAGTTATCCTCGTTATCAAGGTGTTTCTACAGCTGACT # Right flank : CAGAACTTTCAATGTGAGTTGTGACCAATGAAGTATTTAAAAATGATGAGAGATATAGAAGTATGAAGGCAACGTTTTAAAAATTACAAATAATTCACAATTCTGTTGTTGCAAACAAATAAATGTTGTAAAATTAAATTAACATTTTAAGCGATAAAATGGGGTCTTATACTTTTTGGTGAATGTTTGTATTTTTGCATATATTTTAGTCATAGTTATTTAAAGTGTAAGTATTAGTGCTTTTGATTAAAATTTTGAAGAAATAATAAGTGATTAAAAGGTGTTGAGATTGAATATACTACTGTATTGATACAATGACTCACTGAATAGTATCCTTGTTTTTATCTAGGGAGGTGTAAAAATGAAAGATATCATTTACGTTGAGAACCATCATTTTGTCAGTGTTAAAGGGGAAAGTATCAAGTTTAAAAATATTATTGATAAATCAGAGCAATATTTTTTAGTAGATGATATCGAAGCACTGATATTTGATAGTCATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //