Array 1 748285-749970 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR738724.1 Streptococcus suis isolate 9401240 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 748285 36 100.0 30 .................................... CTTAAGAGTTAAAGGACTAGCAGCATAAGA 748351 36 100.0 30 .................................... TGATAAGGTTGTTCTTGTACGATATCCTCA 748417 36 100.0 30 .................................... TAAGGGTATGATAGGTATGGGTACCGCCGC 748483 36 100.0 30 .................................... TGTGCTGAGCACAGATGTATTGCAGGGCTA 748549 36 100.0 30 .................................... AAAACCTGGCAAGACAAAGTCGCTAAATAC 748615 36 100.0 30 .................................... CTTTCACACCGTAGTGTTCAAGGATTTCCG 748681 36 100.0 30 .................................... TGAATCAAGAGAATATTTTGAAAGCGTAGA 748747 36 100.0 31 .................................... TATTGTGGATTATGGCATACCCGTTTGCGGT 748814 36 100.0 29 .................................... CGGAAAAATAGGCGAAAATAGGCGAAAAT 748879 36 100.0 30 .................................... TAATAAAATCGCCCCTCTGCAAGTAATGAT 748945 36 100.0 30 .................................... TTTATCTTTTTCCCATTGTTTAACGTCCAA 749011 36 100.0 30 .................................... AGGTGATCCAGATTATCTTGAAGGTATTAC 749077 36 100.0 30 .................................... CTTTACAACCCTAACCCAAAGTATAAGCCG 749143 36 100.0 30 .................................... GTAAATATAACTATTTACACAGTCCGATGG 749209 36 100.0 30 .................................... AGATGACAAGACCAAGAAGCAAAAGGCACA 749275 36 100.0 30 .................................... ACGTATGCGCGTGTTCAGACTAATGTTCAA 749341 36 100.0 30 .................................... CAACCCTAAAATCAAAACTGGGGGTAACAT 749407 36 100.0 30 .................................... TTGTTTGGGATAACGATACACGGTTTTAAA 749473 36 100.0 30 .................................... TGAATTGGCAGTTGCTGAAATCAATGATAA 749539 36 100.0 30 .................................... GTCACCATTTTCACGAATATGTCCGATATC 749605 36 100.0 30 .................................... AATCTATACCGCTATTTGCAAATCCGGATA 749671 36 100.0 30 .................................... AGCATTTTAAAGATACAGTCGTTCCGCAGA 749737 36 97.2 30 .........................A.......... TTTATTTGTAGAACAAATAGCATCTCATAG 749803 36 97.2 30 .........................A.......... TTTATTTGTAGAACAAATAGCATCTCATAG 749869 36 97.2 30 .........................A.......... TTCTTAGTCTTAGATTCTTCGTCATCATAT 749935 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTAAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGAGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAAATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CGTATAGCTATTCAGATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTCCCATCTCCCCCTCCATGCTATACTATACATAATCGTTTTACTTAAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCACACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAGGTGGTAGCAGTCAATAGTAAGGACTGTATCTGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //