Array 1 62613-61381 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKH01000006.1 Moraxella catarrhalis strain 1583718S NODE_6_length_139494_cov_47.486299, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62612 28 100.0 32 ............................ GTTAACGCTCGGTTTGTCGTTGTTAAGCTTTG 62552 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 62491 28 100.0 32 ............................ AAAGCCATCTTGACCAATCACTGCGTACGCCC 62431 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 62370 28 100.0 32 ............................ TGTGGGCGATTATTAGCAAAAATTGGAAACTT 62310 28 100.0 32 ............................ AAAGCCTATAAGCCCAACGCCACCGTCATTTA 62250 28 100.0 32 ............................ TTTTGCCTGATGCGTGTTTTTTGCAATAAGCC 62190 28 100.0 33 ............................ GCGGTCGTGAAGGCCTGGACAGACTGGGTATCT 62129 28 96.4 32 ...............A............ TGCCACTGTGTACACAGCGTGGCAAGGGTATC 62069 28 100.0 32 ............................ ACCCCAAAATACATCTACACCGATGATAACAA 62009 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 61949 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 61889 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 61829 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 61769 28 100.0 33 ............................ AACATTCCATTCAAATTCAGCAGTGTAGACATT 61708 28 100.0 32 ............................ ACAGGCACTATGGGATTGACATTTGGTTTATT 61648 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 61588 28 100.0 32 ............................ TAAGAAAAAGCCCCTGTGTCAAACAGGGGTTT 61528 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 61468 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 61408 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAATATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //