Array 1 15387-16287 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGN01000001.1 Clostridium sp. AF19-22AC AF19-22AC.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 15387 32 100.0 35 ................................ GTTGAAAAGAATTGTCATGAATGTTTACAGGGAAC 15454 32 100.0 34 ................................ TTCCCACCCAAATAGTGGTATTCCGTCTTTATCC 15520 32 100.0 35 ................................ CCGCCTATTGTTATTTGGTCCCATCTCCCATATAG 15587 32 100.0 35 ................................ TGCTCTATCCGGTCAGATACTTCGTTCGCACGATC 15654 32 100.0 35 ................................ GGCCAGTCCACCATAGTGATCCTGACTGTCTATCT 15721 32 100.0 35 ................................ ACCCAAAAACATCACAATGTCAGAGTAGCGGGTAT 15788 32 100.0 35 ................................ TTCGATAGTCTCATAAGCCGACCAAAACCAGTCAT 15855 32 100.0 34 ................................ AACCGTCAGTCTCATGGGTGTAAAGGTACGAAAC 15921 32 100.0 33 ................................ AGAAAGCCATGAAATATGTAAGAAAAGAATATA 15986 32 93.8 36 ...........C.C.................. CTGTATTCAGGCTCCGTTATGTCTTTAGAGCCGTCG 16054 32 93.8 35 ...........C.C.................. TTGTTTTTGCCGAACATATACATATATCCAAGAAT 16121 32 96.9 35 ....................A........... ATGGTTGGGTCATGTGTTATAGCCATAATCTTTAT 16188 32 93.8 36 ...........C.C.................. TATAATGTACTTACAGGCGCTGGCACGCCGAGTACG 16256 32 87.5 0 ...........C..............C...TT | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 97.6 35 GTCGTTCCCCTTGTGGGGACGTGGATTGAAAC # Left flank : AAGGGTATAAGGAATAACAGAATATATATTTAACAGTCGAGGGGATACAGCTATGGGCTTAGCATAGGGTCGATGCTCCTTGATGAACATGAGCCGCTGGTACATAGTACCCTTGCCACAGGTGGCTTTTAATGAACTGATGCGGTTACTGTCACACCAGAAGGATGTGCACAGTAACCGGGAATACAGGTTTACGAGTGGATATTGTAATTTAAGGTTGTATTGGAGATGGAAAAGGGATAAAATTTAAGGAGAAGGTAGATTTTTCTATAGAGGAATTGTGGATTGTAATTAGGAGAATTGCAGTTGACCAGATACTAATTATGTGGTGCGAACCAGAAGTGAACATAAAAACACTGGGGGATTCGCACCAGAAAAAATGCACAAATTGAGTGTGCCTGTAAATAAAATGAAGAGAAAATGAGCGTAAAGTAGATAAGTTAATCAGATGTTTAGGTGAAAATGACTAAATATTTGGAGAAAAAATTGTCTATTTTGCT # Right flank : TTAGATGGAGGTGCCTTATGAACCGTTTATTTTTCAGCTTAACAATAGTTTCACTGTTAGTTTTAATGATTTCTGGTATTGCTTTTTTAATAACGGGGATATATCATCCAATTGCCGGATTGAGTCTGCTTTTGTATATGGTGTCTTTTGCCGCGTATCAAAAGACTAGAAAATAAGCAAGATTCTCCAGTATTGTGGCCTATAGTTAATAACATGAAAATATGGAGGAACAATGAACTATAAGATAAGGAAAATGAGAAAAGATGAGTATCAGTATCTTGATGATTTTCTATACGAAGCAATTTTCCAGAGAGAGGGAGATGATCCGGCTCCCAGAGAAATAATTCTTAATCCAGAACTACAGGTCTATATTAAAGATTTTGGCATGCTGCCGGATGATTACTGCCTGTGTGCTGAAGTTGATAACAGGTTAGTCGGTGCTGTGTGGGTAAGAAACATTGCCGGGTATGGCAGTGTCGATGATGGGACGCCTGAATTTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGTGGGGACGTGGATTGAAAC # Alternate repeat : GTCGTTCCCCTCGCGGGGACGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 59276-59835 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGN01000010.1 Clostridium sp. AF19-22AC AF19-22AC.Scaf10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 59276 32 100.0 34 ................................ GTCTTACCTAGTAAGAAGTGTTGCTATTGTCAAG 59342 32 100.0 34 ................................ TAAGTCTACTCGTTATAAAAAGCCTGTAGTCTGG 59408 32 100.0 34 ................................ AATATACCGGTATCTGTTTTTTGATCGGTATAGC 59474 32 100.0 33 ................................ ATAAGTCCCTGCCCCCGTATTGGCATACACTTG 59539 32 100.0 35 ................................ ATAAAAATACCTTCTTTCCGCCCCTTTTAAAAGGG 59606 32 96.9 33 ...........C.................... AATGGCAGGGGGTGTAAAAAATTGAGAAAATAA 59671 32 96.9 34 ...........C.................... TCCTGCTGGCTGCGGTTGCTTATCAGGCAGACAA 59737 32 96.9 35 ...........C.................... TCGGCAAAGGGTCCGGCTTTGACAGACAATTTTTC 59804 32 90.6 0 ...........C........A..A........ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 97.9 34 GTCGTTCCCCTTGCGGGGACGTGGATTGAAAT # Left flank : TCAGAAGACGGGGGAGAAGACTTCTTTCTGCTGCGGGATGACGGGCAGTATACAGAAGAGATGGGGCTGAGGCTGGATGTGGAGTATGGGAGGGCGGTAGTATTTTGAGTTGGGATAAAACAAAGAAGAGATAACTTATTAATATATCTATTAAAATATGGTATTATTAAAAATAAGGAACAATCACTTATAGAAGTTTTTTTATCATTTTACATAGCATGGGGGTATGCAATTTGGAGTATTTTTTATGAGCAAGGTTAATGTTTACTAGTTTCATTTACCATTAGCAATGAATAAATTCTAGATAATGCTCAATCATTAATTATTTAGTGCGAACCTGAAGTGAACATAAAAATACTGGGGGATTCGCACCAGAAAAAATGCACAAATTGAGTGTGTTTGTAAATGAAAGAAAGAAAAAAGAGCATAATGTAGACAAACTTCATTAATATTTAGTTAAAAATGTCTAAATATCTGAGGTGGAAATTGTCTATTTTGCA # Right flank : TGAATAAAGGGGATGAGTCATCAAATGAAAAAGTTAAATTACAGGAAGGAGGAAAATGCATGGGGATCGGTGTGAAAGTTAAAGTGTGGGGGGATTTTGCCCTATTTTCTCGCCCAGAGATGAAAGTGGAAAGATGTACTTACGATGTCATGACACCTTCGTCAGCCCGGGGGATTTTGGAAGCCATATACTGGCATCCGGGATTAAGGTGGATCATTGACAGGATTTATGTGAACAAGCCAATTCAGTTTACAAGTGTGAGGCGAAATGAAGTAAAAAGTAAAGTCTCCGCAAATAATGCTCTGTCGGTATATAATGGAGGGGAAAAACCTTTATTTATGAGCAGTAAAGAAGAGATCGTGCAGAGGGCATCACTGATTCTTCGTGATGTGGAATATGTCATTGAGGCTCACTTCGAAATGACTGACAAAGCGAATGAAGGTGACAATCCGGGTAAGTTTAAGGACATTATGATGCGGCGTCTGAGAAAAGGAGAATGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGCGGGGACGTGGATTGAAAT # Alternate repeat : GTCGTTCCCCTCGCGGGGACGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA // Array 2 65362-65720 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUGN01000010.1 Clostridium sp. AF19-22AC AF19-22AC.Scaf10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 65362 32 100.0 33 ................................ ATTTTTGCAGAGAGGGGGCATTATTTACATGAT 65427 32 100.0 33 ................................ ATCCAATTTATCAATTATCCCTTGTAATGGGAC 65492 32 100.0 34 ................................ TTCCTTTGATGCCGCAGCTATGTAAAATGGAAGC 65558 32 100.0 34 ................................ CCATGCTGATGCGTGGATGGCGGAAATGTAGATG 65624 32 90.6 34 .....A.............T.A.......... CGATAATCCAAAATGTCTCATCAGAAAGGTCATA 65690 31 81.2 0 ........T..A..T.......-C......G. | ========== ====== ====== ====== ================================ ================================== ================== 6 32 95.3 34 GTCGTTCCCTTCGCGGGAACGTGGATTGAAAT # Left flank : GATGGATATCCGGTATTTTTATGGAAATGAGGTGTGGAGATGCTGGTACTGATTACATATGATGTAAATACCGAAACTGCCGCGGGCAGAGGGCGGCTGAGAAAAGTCGCAAAGCAATGCGTAAACTATGGTAGAAGAGTACAGAATTCAGTTTTTGAATGTATTTTAGATAATGCTCAATGTGTTATGTTGAAAGCAAAGTTATCGGACATCATAGATGAAGAGGTAGACAGCCTCCGCTTTTACTATTTGGGAAATAACTATAAAACGAAGGTGGAGCACATTGGCGTGGACAGGGGAGTAGCGGCTGATCAGACATTAATTATGTAGTGCGAACCCGAAGTGAACATAAAAACTCTGGGAGATTCGCACCAGAAAAAATGCACAAAATGGGTGCGTTTGCAAATGAAAAAGCGAAAAAAGAGCGCAATGTAGACAAGGTGTTCTGATATTTAGGTGAAAATGCCTAAATATTGAGGGTGGAAATTGTTTATTTTGCC # Right flank : TTAAACAAACTAAGCTCTCGGCCAGCCCCCTGTATAGAAGGCGGTTCCCAAAAGATGCTAACACAAAAAATACTTCGGGGCATATCCCCGAAGTATAAATCATAATCTGGCTATAAAAGAACCGCCAAAAGATTCCATAGCATGCTATTGATTCCCTATTGCCCGGTATTTACTGGGTGCCGTCCCGAAATGTTTCTTGAAAAGCTTGCTGAAGTGGTAGGCATCGTCATACCCGACCATAGCTGCCACATTTTGTATACTAAGTTCAGGAGACTCCTCCATCAGTTCCCGTGCTTTTTCCATACGAAGTTCGATCAGATAATTAATAGGGGTATCACCAGTCTCGCTTTTAAAAATCTTGGAGACATAAAATGTACTCAGATACATGTTCTTCGCGATTTGGTCAAGCGAGATTTTTTCGTGATAATGTTCATTAAAGTAGCGGATCATCTGTTTTACGACGTATTTCTTGTTTGGAGATTCGAAGATACAGCCATTTT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTTCGCGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //