Array 1 1378392-1376441 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059383.1 Streptococcus agalactiae strain BJ01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1378391 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 1378325 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 1378259 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 1378193 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 1378127 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 1378061 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 1377995 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 1377929 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 1377863 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 1377797 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 1377731 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 1377665 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 1377599 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 1377533 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 1377467 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 1377401 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 1377335 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 1377269 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 1377203 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 1377137 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 1377071 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 1377005 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 1376939 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 1376873 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 1376806 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 1376739 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 1376673 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 1376608 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 1376542 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 1376476 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //