Array 1 71-2035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJD01000165.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 71 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 132 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 193 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 254 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 315 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 376 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 437 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 499 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 560 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 621 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 682 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 743 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 804 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 865 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 926 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 987 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1048 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1109 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1170 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1231 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1292 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1354 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1457 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1518 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1579 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1640 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1701 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1762 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1823 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1884 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1945 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2006 29 96.6 0 A............................ | A [2032] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJD01000522.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 72 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 133 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 194 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 255 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCATTACGCAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //