Array 1 713943-715692 **** Predicted by CRISPRDetect 2.4 *** >NC_017595.1 Streptococcus salivarius JIM8777, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 713943 36 100.0 30 .................................... AGACACATAGAATACATGGTAGTTATTGTC 714009 36 100.0 30 .................................... CTGCCGCAAATTTATTTTGTTCTAAAACCT 714075 36 100.0 30 .................................... TTCACAGAGCAATTTCAATCAGGCAGTCGG 714141 36 100.0 30 .................................... AAATCCGTCATCATCTGCCTCTAGGTTTAA 714207 36 100.0 30 .................................... TTAGTACCATTTTAAATGCGTATATAATAG 714273 36 100.0 30 .................................... TCATCTTCAATCAATGGTCGAGGGGATTTC 714339 36 100.0 31 .................................... CTAGCGAAAATTTCTTGGTTTGTCTCTGTTC 714406 36 100.0 30 .................................... AAAGAATTTTTGGTCACGTATCAGCACTTA 714472 36 100.0 30 .................................... TTGCCAGAATTGCACATCCCAGAGGAACCA 714538 36 100.0 30 .................................... ACTAAATCAAAATCAATACTATTTAACTCT 714604 36 100.0 30 .................................... ATTCGTGTCATTCTCAATGAGTTGCGATAC 714670 36 100.0 30 .................................... TGCCATATCAAGTTTTATTCCGTAAAACTC 714736 36 100.0 30 .................................... GCAACAAGGTTTAAATACGACGAATTACAA 714802 36 100.0 30 .................................... AAGCTGTGTGATTTGGACTTGATGAAGTTT 714868 36 100.0 30 .................................... CCGACGCTACGTTTTGAAGCTAAACGTACG 714934 36 100.0 29 .................................... TAGGCGACTGTGTTCCGAATATTGCGAAG 714999 36 100.0 30 .................................... GTTATCTGTATTGAGGTGAATATTCCCCCA 715065 36 100.0 30 .................................... GACGCTGTAGACAGTTCTAATACCAACACC 715131 36 100.0 30 .................................... AATGCGTGCAGGGAAACAAACAATTGATAT 715197 36 100.0 30 .................................... ATATACATGACTTCAGTACCCGAACTGAAC 715263 36 100.0 30 .................................... AAGTATTTCTGAAAGCGTGAGAACGTCTCT 715329 36 100.0 30 .................................... TGATTTAAGTTTTTGGAAGTCGTCTTGACC 715395 36 100.0 30 .................................... TCAGACGCTTCACCGTCTCCCACTTCAATT 715461 36 100.0 29 .................................... CAAGGCTTTATGCCTGCAAGCAGATATAG 715526 36 100.0 30 .................................... TCAGACGCTTCACCGTCTCCCACTTCAATT 715592 36 100.0 29 .................................... TTTGTTGGCGCAATTGACTTTTTCCAAGG 715657 36 88.9 0 T............T....................GT | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTCAGTGGAAACATATGATAGTTTTTATAAGCAAATTGGTCGACTAGTCAAAAAGTATCCAAACCTAACCTTTATTTTATTTCCAAGTGATCAATGCTATTTAAAGATTGATGAGGAAAATAGTAGGTTTGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTAGAGTTTATGTATGAAAGTGTGGCGAAACACTATCCAAGCAATAATTTTCCAACGAGAGACGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATTTTGAATATCTTAAATCAATTGTTTCATTTTAATTACCGTATAAGATATCCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGAATTGACAATGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATAAACATAGGGATTGTCAGGCTGACCGACCTCTTTAACCTCAGTCAAATTGAGGATAGGAAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTATCCTTGAAGGTTTGGTCACTTCCTCTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATAACCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGTTCCTTGGTCATCTCCTTCTCATAAGCAGAGGAGGTGAAGTAGGAGCTAGTGTCCGGCTTCAAGTACTGGATGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //