Array 1 636327-638856 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698987.1 Leminorella richardii isolate MGYG-HGUT-02385 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 636327 28 100.0 33 ............................ TGTTGGTTATTGGCTCGACTGCAATATGGAGAA 636388 28 100.0 33 ............................ TTTCTTGAGTCCATAAAAAAGGGTAAGGCTGTT 636449 28 100.0 33 ............................ TATCGATAAAGTGCTGTGCCATCTCTTTATCAT 636510 28 100.0 33 ............................ CTGACCTGAGTGCTCTACATCTTGTTTATCACG 636571 28 100.0 33 ............................ CTGCCACCTGCAATGTGCACCCTGCAATCTGTA 636632 28 100.0 33 ............................ CAGGCTCGCAAACTGTGCTTGCTCGGTCACACC 636693 28 100.0 33 ............................ CAAGATGCGCCACCGATGGACTTTGACGACGAT 636754 28 100.0 33 ............................ CACTGAAAGTTAAAGTTAGCTCAGCATTTGCTC 636815 28 100.0 33 ............................ TATCCCCTGACATATCCGCTTGAACTTGTAAGC 636876 28 100.0 33 ............................ CAGTTGCTGGCATTCTCGGTACTAGCTATATAG 636937 28 100.0 33 ............................ CGTGGTTGCAAAAGATACTCTTATCCGAGTGAC 636998 28 100.0 33 ............................ TTACAGGCCGCAGTTCGCGCGATGCTTTTCTAA 637059 28 100.0 33 ............................ TGAGCCACAATCTGGCAGACAAGACACCGGAAG 637120 28 100.0 33 ............................ CCAGCAGATTGCACTATTCGGCCAGACGACAGA 637181 28 100.0 33 ............................ TGCGCTCTACTGACCCTCAACCCCTCGACATTT 637242 28 100.0 33 ............................ TGGTACACGCTATGTTTCTTGATGTTGGTCGCC 637303 28 100.0 33 ............................ TGATGTAAGTGTGATCTGGCAGGCCGGCACCGC 637364 28 100.0 33 ............................ TTGTCGAAAGTGCATTCTTGGTGCAGTGGCTGG 637425 28 100.0 33 ............................ CTAACCCGCCTCCGATTAGGGAGCGGTCAGTCG 637486 28 100.0 33 ............................ CGTGAGGCGCAAAAGCGAGGTGAAGCTCTCTTG 637547 28 100.0 33 ............................ CTGTGCCCAGACTCCGGAGTCGTCTGCGGGGAT 637608 28 100.0 33 ............................ CGCCCGACGAACACGAGCTGGAAGACTGAAGAA 637669 28 100.0 33 ............................ TGTTAATGTCCATGCTACCACCGCCAAGATACT 637730 28 100.0 33 ............................ TTTAATTAAAGAATGTTTATCTAAATCTTGGAG 637791 28 100.0 33 ............................ CATTATAAAGGACGTTCTTCGGAATTTAGTGCT 637852 28 100.0 33 ............................ CTACAGATATGTTCAGACTGAGATTTGTGCATT 637913 28 100.0 33 ............................ CAACTTGGTCAGGTCGGGTCGATGAGCAAGCGC 637974 28 100.0 33 ............................ TCGAAGGCTCTCGTAAAAGCCTTCTGTTATGAC 638035 28 100.0 33 ............................ TGATTTGATTTCATCGATATGGCGCCACAGGCC 638096 28 100.0 33 ............................ TATCCGACCCCGTATGTCCATAGCAGACAGTGA 638157 28 100.0 33 ............................ CCCGTCCGTCATGAATCATGACTTTTCGATGAT 638218 28 100.0 33 ............................ TTCGCGCATGACCCATCAAGATATATGGCGTTT 638279 28 100.0 33 ............................ TCGCGACGCTTACAGCGCTTGCGGAGCGGATAC 638340 28 100.0 33 ............................ CACGTTCGTTAACGGTGATAACTACGTGGGGCA 638401 28 100.0 33 ............................ TGTTGGCGGCAGCCTCACTGTGCGAGCTTCGAG 638462 28 100.0 33 ............................ TAGCACCGCTGAGAACATGGCCGCCATGCCGAA 638523 28 100.0 33 ............................ TCTGCCGTTTGCATCGTATCAGATAGACGTTAG 638584 28 100.0 33 ............................ CAGCTATACGGACAGCAAAGCTACGGACACGCG 638645 28 96.4 33 ...............A............ CAACCACGAAAACGGCCTTGTCGTTGTCGGCTT 638706 28 96.4 33 ...........C................ ATTTGTTTGCTTGATTATTACTACAGCGAATCA 638767 28 85.7 33 ..T....T...A..T............. CATCTGGCCGTAACGTTGTTTAAACCAGTTAGC G [638781] 638829 28 85.7 0 ......CT.......A........C... | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.1 33 GTCTTCTCCACGTACGTGGAGGTGTTTC # Left flank : AGTTGAGCATCGATCTGGCCTTCGCGCTGAATAAGGAAATGGCAGGGCAGTATGATAAGCATCTGTTGGCGAAACGCTTTCGCGAGCGGGTTATCGCCATGGACTTGTTGACACTGGTGGCCCGAGATATCACTCGCCTGCTGGGAGAGGGAAAGAAATGATAGTCGTCGTTGCCAACGATCTTCCTCCCGCGGTGCGTGGCCGCATGAAGCTTTGGTTTGTCGAGCCTAAAGCTAATGTGTTTGTCTCCGGCGTTAAGGACTCCGTCGCTAATCACGTTGTGAACTATCTGCTAGGCCACTGCCCGACGGATGCGGGCGTGATCATTTTTAAAAGCCTGCCCAACCCGCCCGGCTATGAAATCAGAACCGTCGGGCTGCCTGATAAAACCCTTTGTGAGATATCTGGTTTGCAGCTGGTTATTGAGAAAATGCTGACAGCAGATTAAGTTGCGAACCCAATATGTGGGTTGTTTAGGGGCTCTTTAACAATATATTGGT # Right flank : CCATGAAAATTATTAGAGGTATTGATTTTCCACATAACTATGAGGCTATTTCTTACACTTTTATATTTCCCATCCGCTACTACATCTTTTAGGATGACCAAAAAGACACCGTCGTAAACGCATTTGTTGCGTGAATTAATAGGGATAACGATTGGCTACCTTAATGGAACAACCCGCTGTGAACGCGCCCAAGACCGCAATCAAAATCATTGCAACGGGCATTGCTCTGCCGGGCGAAAAGATTGTCTCCTCTGAGCTGGATGCAAAGCTTGGCAAGCCGGAAGGCTACGTTGAGCGGCGTTCGGGTATTGCTTGGCGCTATCATGCATCCCATGACGCCAGTCAGGCGGCGCTAGCCGCAGAGGCGCTGCATAACGCGCTCAAGGCCGGATCGCTTGCTCCGTCCTCCATCGATCTGCTTATTTGTGCCTCTGCCATTGCCGTACAGGCGCTGCCGTGCAGTGCCGTTCATATCCTCAAAGCCGCTAAAATGCCCGATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCACGTACGTGGAGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1247658-1247986 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698987.1 Leminorella richardii isolate MGYG-HGUT-02385 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1247658 29 100.0 31 ............................. GAGACATCGGCCTTCAGGCGGCTTTTTTCTT 1247718 29 96.6 31 ............................G TTAACTCGCCCTCACTGAGGTTTGTCAGCAT 1247778 29 96.6 31 ............................A AGCTTATTAATCGAGATGGTGAAGCATCGAG 1247838 29 93.1 31 ..................T.........A GCTGGGTCCCAATACCTGCCTTTTCCTGTCC 1247898 29 100.0 31 ............................. TTGAGATTGGCGTTTCGCCGAGATGAGAAAA 1247958 29 82.8 0 ......................CCA.T.C | ========== ====== ====== ====== ============================= =============================== ================== 6 29 94.8 31 GTTGACCGCCGCATAGGCGGCTTAGAAAT # Left flank : GTCGGCGAGGTTGCCGGGCTAATGGTTGACGCCGGGCTGGTGGCTATTGCCGCCTTTATCTCTCCCTATCGACAAGACAGAGCGGAAATAGCTCAGCGGCTGCCCGCCGGGCGCTTTATCGAAGCCTTTGTCGATACACCGCTGGAGGTGTGTGAACGCCGCGACCCTAAAGGCCTTTACCAAAAAGCGCGACGGGGAGAAATCCCCGCTTTTACCGGCATCGATCTACCCTATGAGCCGCCGCTGACGCCGGACGTTCACCTTGATGGGCAGAGGCCGGTGGAGGAGCTGGTGGGGCAGTTGATTTCTGCATTAGAGGCGCGGGGCGTGCTTAGCCCACCTTAACGCCAGCAAAAGCGCTGCGCTTCACAGACCCTTTTTTATTCGGTTTCTTAACCTATTGATTTATAGATGATGATTTTTCACGATAAAAAAAGGTTTTTTACATTGATACGCTGAAAAAGTGATTAACAACAGAGAGGTAGTGGCGTATTGTTCTA # Right flank : CCTATCGAGACCTACTTTTTTCACCGCTTTGCTACCTGCATCAATATTTATTGCCTCTTTTTCTTCATAATTTCAGCACGTGATTAAGGCCCAGCAAGGAACCCCTATGGCCGATTGGAATCCCTCTCTTTATCTGCAGTTTGAATCTGAAAGAACCCGCCCGGCGCAAGAGCTGTTGGCGCGTATTTTTCACGCATCTCCTCGGTATATCAGCGATTTGGGCTGCGGCCCCGGCAACAGTACTGAACTGCTGCATAGCCGCTACCCAATGGCGTTGACCACCGGTGTCGACAGCTCTAAGGCCATGCTGGAAAAAGCGGCGCAGCGGCTGCCAGACTGTCGCTTTGTTGAGGCGGATATCGGCACTTGGCGGCCTGACGTACCTCAGGACATTATCTACGCAAACGCCTCTTTGCAGTGGGTGCCGAACCATAGCGAACTGCTGCCCCATTTGTTGGAACAGCTTGCCGACGGCGGCGTGCTGGCGTTTCAGGTGCCGG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACCGCCGCATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //