Array 1 763-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGCZ010000070.1 Bifidobacterium longum subsp. longum strain DLBL 09 NODE_12_length_765_cov_61.0562_ID_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 762 36 100.0 25 .................................... CCAGTAAGCAGACGTCGCGGGTGAA 701 36 100.0 28 .................................... ACTGATTTTCATCATAATGAGTACTCGG 637 36 100.0 28 .................................... GGGCCCACCTGATTCTCCAGCGGCGTAA 573 36 100.0 28 .................................... CGAACGTGAGCCACTCTTGCTCGATGTT 509 36 100.0 28 .................................... CCAGTTCGGGAATCCCGTCGCGTGTGAA 445 36 100.0 28 .................................... ACGTTGATAATCGCATTGCGATACTCGG 381 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 317 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 253 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 188 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 124 36 100.0 28 .................................... CCAATAAGCAGACGTTGCGGCCGCTCAC 60 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 12 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GT # Right flank : CTCTGATTTTCATCATAATGAGTAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 274986-272254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGCZ010000051.1 Bifidobacterium longum subsp. longum strain DLBL 09 NODE_2_length_419474_cov_73.8147_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 274985 36 100.0 28 .................................... TTTCGTACACCGTATGTCTTGCCTAAAC 274921 36 100.0 28 .................................... GTGTCCATCGAGATATCCATGGAGATGT 274857 36 100.0 28 .................................... TTAGACTCCCGGGAAAGCAGTTGGCAGT 274793 36 100.0 28 .................................... GAATACAAGCTCGCCCGTCAAGGCAAAC 274729 36 100.0 28 .................................... GAATACAAGCTCGCCCGTCAAGGCAAAC 274665 36 100.0 29 .................................... ATCCCACCCCAGCCTTGTACAAGGACACG 274600 36 100.0 28 .................................... CTCACTCCGAGCGCGGCGGCGAGGGCCA 274536 36 100.0 28 .................................... GCGTGCGGATTGTTGCCCTCCCTGTCCT 274472 36 100.0 28 .................................... AAATCGTATCCGCCTTTAACCCACACCA 274408 36 100.0 28 .................................... TCAATGACGGGGATATCGATAAGGAATT 274344 36 100.0 28 .................................... CCAATAAGCAGACGTTGCGGCCGCTCAC 274280 36 100.0 28 .................................... TCTGATTTTCATCATAATGAGTACTTTC 274216 36 100.0 28 .................................... GGTCCCAACTCCTCCTCAATCGGCTTAA 274152 36 100.0 28 .................................... CGAACGTGAGCCACTCTTGCTCGATGTT 274088 36 100.0 28 .................................... CCAGTTCGGGAATCCCGTCGCGTGTGAA 274024 36 100.0 28 .................................... ACGTTGATAATCGCATTGCGATACTCGG 273960 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 273896 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 273831 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 273767 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 273703 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 273639 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 273575 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 273511 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 273447 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 273383 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 273319 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 273255 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 273190 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 273126 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 273062 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 272997 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 272933 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 272869 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 272804 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 272739 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 272674 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 272610 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 272545 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 272481 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 272417 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 272353 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 272289 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 43 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GACTATCTCCAAGAAAATGTCCGCAGCCCCCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCAGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCGGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //