Array 1 16251-17134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHUG010000005.1 Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5 strain HAZEL-067 NODE_5_length_279149_cov_17.040241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16251 29 100.0 32 ............................. TGGGAGCCGTTAAGTGAAGCGCTGCTGATGTT 16312 29 100.0 32 ............................. TGAGTCGGGCAAAGACGAAGCGGTTGCTCTTG 16373 29 100.0 32 ............................. TCGTAACCAAAAATAATGGCGTGATAATGCGG 16434 29 100.0 33 ............................. ATGTAACTCATCCTCAGTCCACCATTATTCAGA 16496 29 100.0 32 ............................. GTAACGCTACAGACGTGACTTTTATTAATGTC 16557 29 100.0 32 ............................. GTTGTCGATACATTATTAACTGAGGATACAAA 16618 29 100.0 32 ............................. GAATAACCGACTGGATTGTCGAGGCCGCCGAG 16679 29 100.0 32 ............................. AGCCAATTGGTTGCAGAGTTACAGGCGCTATG 16740 29 100.0 32 ............................. TGAATTTATGGCAGTAGAGGAATTCCCTGTCC 16801 29 100.0 32 ............................. CGGCGCTCAACAATGTAACGTCTCTCGGCTCC 16862 29 100.0 32 ............................. GCATTTTTGCTTCGGGTAGATCGGTTGGTTGA 16923 29 100.0 32 ............................. CGAGCCCAGCGAAAGCAGATCGCTGGACGCCT 16984 29 100.0 32 ............................. AGGGGGCTATATGGCATACGGCAGGATTTACG 17045 29 100.0 32 ............................. TACGTATACAGAGAAAATAAAACGTTCCCAAA 17106 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : CCTGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGCAAATACCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGTCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCTCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTA # Right flank : GTATTTCAATATTCATTTATTGCAGGTGTAGGGGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATGGTGAAGGCGTGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCAGCAGCGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCTGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 189-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHUG010000182.1 Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5 strain HAZEL-067 NODE_182_length_225_cov_1.306122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188 29 100.0 32 ............................. AATTTCCTTGCTTGTAAATTCATTATTACCAT 127 29 100.0 32 ............................. ACGTATATGAGCCAGACCGGAGCACTGACGCT 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGTCTCCAAGATACCAGACGGATGGATTGAAAC # Right flank : GCAAAAAACATTCGCAAAAATAGCGGCGTGGCTGTGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45514-46335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHUG010000011.1 Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5 strain HAZEL-067 NODE_11_length_174289_cov_20.479496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45514 29 100.0 32 ............................. CCCCCCGATTAAGGAGGCTTTGATGATTAATC 45575 29 100.0 32 ............................. GCAGTGACATAATTAAAAGATTATTCCCTCGC 45636 29 100.0 32 ............................. GAATACGCCTTCGGGCTTGTGCCGTTTGCGGC 45697 29 100.0 32 ............................. CCGTCTTGCTTTTCGAAAAAAGGCACTAAATC 45758 29 100.0 33 ............................. AATATGAAATGGAACGAACTGGCGAGAGTCAGA 45820 29 100.0 32 ............................. CGCCAGGCGGTGGACATATTCAATTGCGGCGG 45881 29 100.0 32 ............................. AGCGTCCCAGCTGGGAGCTTGGCCCGTCTTCT 45942 29 100.0 32 ............................. CTACAACTTGCTTGTGATCCCTCGTGACCAGC 46003 29 100.0 32 ............................. CGTGCGGCGGGCTGGCTGCAATTTGTCAGATC 46064 29 100.0 32 ............................. GCGATATTGAAGAAAAAAGCGCCCGCATGATG 46125 29 96.6 32 ...........G................. TCCCTTGCCGCGCCCAAAATCCATAATAAACA 46186 29 96.6 32 ...........G................. TTTTTGTCCACAAAAAGTTTTTGCGCCTGGAC 46247 29 96.6 32 ...........G................. CCGATTTCGTGATTCTCTACGTAGTCGGATAA 46308 28 89.7 0 ...........G...........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCGCACTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACATTTAGA # Right flank : GTTGCATAATCATAATCTGTATACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAGAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGCCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62418-64400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHUG010000011.1 Salmonella enterica subsp. salamae serovar 1,13,23:z:1,5 strain HAZEL-067 NODE_11_length_174289_cov_20.479496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62418 29 100.0 32 ............................. CTTGTTAAAGACAGAATTAACGCCGTTAATGC 62479 29 100.0 32 ............................. TCTCCAAGATACCAGACGGATGGATTGAAACT 62540 29 100.0 32 ............................. AATTTCCTTGCTTGTAAATTCATTATTACCAT 62601 29 100.0 32 ............................. CATCGAGAGGATGGAAAATTTTCCCTCTTCAT 62662 29 100.0 32 ............................. TAGGGTTAACCAAATTCATTTTGCGTTTAAAT 62723 29 100.0 32 ............................. AATATCGTTAACCCGGTTGAATACGTACAGGC 62784 29 100.0 32 ............................. CTGTCTGAGCGCTACACGTTGAGCTATCTGGC 62845 29 100.0 32 ............................. ATACGCTTCCGTTTGATTCTTCATCTAAAACA 62906 29 100.0 32 ............................. TCATGATTTTATTGGCCTCGCCCCCCATGAGC 62967 29 100.0 32 ............................. CACTCCCCGTTACCAATAAAAAACCCGCACAT 63028 29 100.0 32 ............................. GTGGCGCCACGGCGCAGAGTAAAAAAACACGC 63089 29 100.0 32 ............................. TCATACGGTGTTCTGATTCAGCAATAAAACTA 63150 29 100.0 32 ............................. ACACTCTCGCGTAACCAAAATTCACTAATCCC 63211 29 100.0 32 ............................. AGGAAACGGCGGGCGCTCTCAGCGAGGATGAA 63272 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTTCACGTC 63333 29 100.0 32 ............................. GAGAACAAAAAAACCCAGGTGATTCTGTTGAT 63394 29 100.0 32 ............................. GTACTGGAGAGGTAAATATTCCAGTTACAGAT 63455 29 100.0 32 ............................. CTGCTCGCAGTTATTGGCGTAATAGGCCGGGC 63516 29 100.0 32 ............................. CGGCTGGAGTCTGATTGCTCGCCTGACTTTAA 63577 29 100.0 32 ............................. ACGTATATGAGCCAGACCGGAGCACTGACGCT 63638 29 100.0 32 ............................. CAAAAAACATTCGCAAAAATAGCGGCGTGGCT 63699 29 100.0 32 ............................. ACCGACCCCAAAAACTTCGCTAAGGCCGTTGA 63760 29 96.6 32 ............T................ CTGGACTGATCAGGCTGGAAGTTGGTCAGGTA 63821 29 96.6 32 ............T................ TGGTTAAGTCCGAGCTGGCGTGGCTTGCAGAA 63882 29 96.6 32 ............T................ TCGGCCTCATCTCTCAGTGATTTTTCAACCCC 63943 29 96.6 32 ............T................ CCATCCAGCAAATCCTTCCAGACCCAACCAAA 64004 29 89.7 33 .......G....T....A........... CGCGATAGCGTCCGCTTTGCCTTTGTCGGTCGC 64066 29 96.6 33 ............T................ GCCCACGCCTCGACGCGGCACATAAAATCGTGC 64128 29 100.0 32 ............................. GGCGTCTGGTCGCAACTGGTGCCTGCTAAATT 64189 29 100.0 32 ............................. GGGTCGCGGGTAATACTAATTACGCCGTTGGT 64250 29 100.0 32 ............................. CAGCGCCAATGGCCGGAGCCGAAAGACGGGGA 64311 29 100.0 32 ............................. CTCAACCGCTCCCAAATTGCCGGGATTTTTAA 64372 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTAGCCGCCGGAGAAATCGAACGCCCTCAACCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATATCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACAGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCAGGGGTTTATGTTGGCGATACATCGAAACGCATTCGAGAGATGATCTGGCAACAGATTACACAACTGGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATTTGGATGGACTTAGATTAGTCTCTTTTCTTCCCCTTTAGAATCAATGAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTAACGTTGGTAGTTTGTTGAGTGGTAAAAAAAGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTTCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAATGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //