Array 1 80854-79301 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANRX01000016.1 Neisseria meningitidis 96023 NM96023.contig.15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 80853 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 80787 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 80721 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 80655 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 80589 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 80523 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 80457 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 80391 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 80325 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 80259 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 80193 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 80127 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 80061 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 79995 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 79929 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 79863 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 79797 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 79732 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 79666 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 79600 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 79534 36 100.0 30 .................................... TTCTTCAAATTCCTTAGACGCAATTAATGC 79468 36 100.0 30 .................................... GAATCTTTAAAGGCAGATTCGGGATTTCCC 79402 36 100.0 30 .................................... TGATGCGGCGATACAGCGAGCCAGTTGCAT 79336 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //