Array 1 3853165-3856663 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051651.1 Xanthomonas campestris pv. badrii strain NEB122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 3853165 31 100.0 35 ............................... TTCTTCGCGTCCGTGATGTCCTTGGGGTTCGGCTG 3853231 31 100.0 33 ............................... AATGCCGTAGCCCTGGACGACTAGAGCGGTCAG 3853295 31 100.0 34 ............................... AATTCCAACCTGGTCAACTCGCCAATGACCAGGG 3853360 31 100.0 34 ............................... CTTATAGCGATGTCAATAGGAGTTCCTAACTTTT 3853425 31 100.0 35 ............................... CAGGCCTGGCGAGTCCAGCGATTTGATGAACCCGT 3853491 31 100.0 34 ............................... TCTCCACTCGTACCACGCCCGGTTGTATTGGCCG 3853556 31 100.0 34 ............................... GTGATCTCGAAGTCGTATTTCATCGCATACGACA 3853621 31 100.0 34 ............................... CCCGCTTCGTTGTTGCCGTTCTGGGCTGATGTAC 3853686 31 100.0 34 ............................... AGCACCGACCGAACGCCGGCCATGAACCGCTCCA 3853751 31 100.0 33 ............................... TTCGTCCTCACGCCGCCACCGCCTTGACCTTGT 3853815 31 100.0 34 ............................... GCGGTCCAGTTGCCCGTAGCTCGCATAGCTGCTG 3853880 31 100.0 34 ............................... AGCTTGAGTGCCTATGAACAGATGCTGCGGGTTG 3853945 31 100.0 35 ............................... AGGCGCACCAGGCCAGCCTCCCGGTCGATCTGGAA 3854011 31 100.0 34 ............................... CTGTTGAGATTTGCCCGTAAGGCGCGGATCCCTT 3854076 31 100.0 34 ............................... GCTTCAACGATCCCGACTACGCGCTGATCGTTGC 3854141 31 100.0 35 ............................... TTCATCTCGGCCATGTTGACCACGCCCGAGAGCGG 3854207 31 100.0 33 ............................... GGTCACTGGATGCCGTATCAGTATCGACACGAC 3854271 31 100.0 33 ............................... TACGTTTGGCAAACCAAAACGCTCAAGAATCAG 3854335 31 100.0 35 ............................... CTGTTGCCGGCACGACGGGCACTACAATCACGCGC 3854401 31 100.0 34 ............................... GCGGCTTTACCGATTGGGCGATCGGTGCTGCAGT 3854466 31 100.0 33 ............................... ATGCAAAAAGCCTAACCCTCTACAGTGTCATAG 3854530 31 100.0 33 ............................... ACTAGTACCAGCGTCTGCTTGGCGACGTAACGC 3854594 31 100.0 35 ............................... TTACAATTGAACCGTAGAGTTTAGAAATTCATGGC 3854660 31 100.0 35 ............................... GCGATTGAAGATTGATGCGTGCATGTTTCCCCCTG 3854726 31 100.0 34 ............................... CGCTGGCCGCCTTCGTTCCAGTCGAGATATGCGA 3854791 31 100.0 33 ............................... CGGTACTGGCGCCCGGAGTACAGGTGCACTTCC 3854855 31 100.0 34 ............................... TGCTCCGCCGTTGGGAGCAAGACCTCCAGCGTCC 3854920 31 100.0 34 ............................... AAATGTGGCGCTGATAGAGATCATTTCCCCACCT 3854985 31 100.0 35 ............................... TTGTTCGTGGCCCTCCTGACGCAATGTGTAAATGC 3855051 31 100.0 34 ............................... GAGTACGGCGCGATCGCGCAGAAGGCCAAGGACC 3855116 31 100.0 37 ............................... TGGTACTCCGGTGTGCCGGGCTGCAGCCCGGCCGCAG 3855184 31 96.8 33 ..............A................ ATGTTCGAAATGACCGCCAGCCTGTTGATGCAC 3855248 31 100.0 35 ............................... GTGAGCGTATGTCTGTCGGAGACCTTCGAGCTTAA 3855314 31 100.0 38 ............................... CGCAATGCCCAGGTGCTTGGCGATGCGATCAAAGCGCA 3855383 31 100.0 35 ............................... GCTGCAGGTGGGCATGGCCCAAACCTTCGCGATGC 3855449 31 100.0 33 ............................... CTTCGATCAGCTCGCGGTGTGCACAACCATTGC 3855513 31 100.0 33 ............................... ATGCGCTTGAAGAAGTTGACCGCCTTGTCGGTG 3855577 31 100.0 34 ............................... ATTTCGGCCGAACCGAACAGCATCCGAACGGCCG 3855642 31 100.0 36 ............................... AGGCCGCAGGTGATTTCGGTTCGAAGCGAGTTTATC 3855709 31 96.8 33 .............................C. GCGCCATGCAGTTGCAGTGTGTGAATTCCGCCG 3855773 31 100.0 33 ............................... GCCGAAGTCCGCACGAACCTGCGGGCCATGCCT 3855837 31 100.0 35 ............................... TTGTAAAGCTATGACATGGGCGCACCCTCGCCGCC 3855903 31 100.0 35 ............................... GCGCACCGGCCGATGACCAACGACCACCCGCCGGT 3855969 31 100.0 34 ............................... CCGTTGAATGTCCAGCTGTCGCTGAAGCACCTGT 3856034 31 100.0 35 ............................... GCGCCGCAACCACAAGTAACGAACTTCGTTGGCCT 3856100 31 100.0 35 ............................... GATAGCTCAGGGTGTCGGCGCGAAGCGTCAAGCCA 3856166 29 93.5 35 ........--..................... TGGGATTTCGACTTTACCCCGGTTTACCCGGCCGA 3856230 31 100.0 34 ............................... CCGCGCACAGCTGCGGATCTGCTGCATCTCGTTC 3856295 31 100.0 35 ............................... CCGGTCGACGGGTCGACTTCGGTCTTCGCCGGCGC 3856361 31 96.8 35 .......T....................... ACGCTCTGACAACTTAAATTTGGTATGCCGGGACC 3856427 31 93.5 42 ............TC................. ACTACAACGCAGAAATCTGCCAGTCCTGGCGATCGGTGACCG 3856500 31 96.8 35 ..........T.................... TGGCAATTCTCACCCTGCCCATCTTGCAAAGAGAG 3856566 31 83.9 37 ...A........T...TT..........C.. AGCATTCATCGGGACACAAATGGCGAAGGCTACTGCG 3856634 30 83.9 0 ...CT.......G..........-.....C. | ========== ====== ====== ====== =============================== ========================================== ================== 54 31 98.9 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAATGACACGGCTCAAGTCCCATGATGATTCTGGTCAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAACGCCTGCGCAAAGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAAATTGAAGTCGAACCTGCCCAATGGACTGAATTACGGCAGCAACTCTGCGACCTGATCGACCCGGCCCTAGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGTCCACTGATTTTTTGACGCGAACCCCAAGCGTCCCATAAAAACCGGGCAGGTTCGCAGCTTCGTCAAGCAACTGATTTTCAAGACAAAAATAAAAACATAGCAGATTCAAAGGTCCACATGACCACTTCTCGACCGCTTTATCGGCGAGTCCGCGCAACTGCCCGTGTTTTAGCAACGATGGCAAGCCCTTATCCTAAGGGGG # Right flank : CAACATGAACATGCTGCCTTAGTAGGCTGCTGAAATACTCTGGATGGACCTTGGCGAATGCACGAGATAACCCAACACGGAACTCCTGCGTGAAATCTGAGGCTACCAATGTTCGTCGGACCCTCAGAATTGGCGGAGAAGCTACTCATCTATGCAAGTCGGCAGGCCGAAATTAGTGTTTCAGCAGCCTGTTAAGTTTTCCCGATACGATCGTATCCTCAGGCACGCGAGTTGATTCTCAGCCAAGAGAAGTGATGCGCATGAATTTGGCTAGTTGTGCCAGTGTGGGCGCGCGGATAGAGATGGCACGCCTGGTTGCGACGCATGCAATCCTGGATACCTCTATTTGACGATGATGCTTTGCGGCGTACCTGCAGGCTTGCCGTCGACCATGACCTGCGCAGTGTAGGTGCCAGCCGGCCAGCCATCTGGCTTGCTGAAGCTGATGTTGGTGGTCTCTGCGCCCGTGGTGGTCAGCGTGGCGCTCTGCTCGCCGGCCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4789336-4777965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051651.1 Xanthomonas campestris pv. badrii strain NEB122 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4789335 28 100.0 32 ............................ AGGGAGCATGTGATGGCTGGCGGCGAGCTGCC 4789275 28 100.0 32 ............................ TGACACTGATTATATCGTTGATCGCCTAAGGG 4789215 28 100.0 32 ............................ ACTGGCGCGTTTGCTCGCCGCGTAAATGCGCA 4789155 28 100.0 32 ............................ ACATCATCATCGCCCAGGAGGGCAACATGGCA 4789095 28 100.0 33 ............................ GATCGCGTAGCCGGCCGGCAGTGCGTTGACCGG 4789034 28 100.0 32 ............................ TGGATGGCTGCAGAGCGCGCCGGCATGCGCAA 4788974 28 100.0 32 ............................ TGCCGCGAAACGGCCCTGCTGCGCATCCATCA 4788914 28 100.0 32 ............................ GCATAAACGCAAGCCGGCGATCGGCATAGGAG 4788854 28 100.0 32 ............................ AAGCTGCGCAAGGCCAAGCGCGCAGCTATCAC 4788794 28 100.0 32 ............................ AAGGTGGCGCTGGTAGTAGTGCATTTCAGAAC 4788734 28 100.0 32 ............................ ATGCCGCGCACCAGGTTCAGCGCCGTCGCTGG 4788674 28 100.0 32 ............................ TCCGACGCCTCGGTCCATCTGTCGGTGACGCG 4788614 28 100.0 32 ............................ AGAGCAGGCCGGTGGTCGCAATGTCGTGGCTT 4788554 28 100.0 32 ............................ TTGAACGCGTCTACGCCCTCGATGCCGAACTT 4788494 28 100.0 32 ............................ TCGCGTGCAGTGTACTTGCGGAAATTCTGCGG 4788434 28 100.0 32 ............................ TTTCCTCGGCCCTGCGCCGCGTAAGGCCGGCC 4788374 28 100.0 32 ............................ AACGAGAAGCGCGCTCTGGTCACGGACTTCAA 4788314 28 100.0 32 ............................ AGTCCGCCGCCATAGTTGCGCGGCGCATCTCG 4788254 28 100.0 32 ............................ ATGCTGCGAAATCTGCGAGTTGATCGGGCTTG 4788194 28 100.0 32 ............................ ATCTTGATCCTGTTCCTCTACGGCATGGCCAT 4788134 28 100.0 32 ............................ ATCTTGAGGATGGTGTTGGCAACGTCTGCAGG 4788074 28 100.0 32 ............................ CTCATGGGCGAGGACACGTTCGACGTAGGCCT 4788014 28 100.0 32 ............................ GTGAGGTGCCGGACGGCTTTGAGCTGACGGCC 4787954 28 100.0 32 ............................ CCCATCGCGCGGTGGCGCGCCCGCATGGCCCT 4787894 28 100.0 32 ............................ AGGCGATCGCCATCTACAAGGCGCAGTATTGG 4787834 28 100.0 32 ............................ ACTGCTTGGTCGCCCCGGGCCAATTCCAGCGC 4787774 28 100.0 32 ............................ TGGGTGCGCGCACCCGCTTCTACACCGGCCTC 4787714 28 100.0 32 ............................ ACAAAGACGAGAGCTTGGCCGAGCTGCTGCCT 4787654 28 100.0 32 ............................ TTGGCACGCAGGCAGATAACCTCAGAGACATG 4787594 28 100.0 32 ............................ ATACCCCGCAAAAGCAAAACCCCCGGCTTTCG 4787534 28 100.0 32 ............................ AACGGGTATGGCCAGATTGGATCGGGCGGGAG 4787474 28 100.0 32 ............................ ATTCCAAAATTCCCGTGAATGCTTGGTACTGC 4787414 28 100.0 32 ............................ ACGCTCGCCGCCCTGGCCAGTGCCGGGGTGCT 4787354 28 100.0 32 ............................ TCGGCGCTTGCCCCCAATGCCACACGCGACAG 4787294 28 100.0 32 ............................ TCGATGCCGGCACCAGGTCGGCGGCACAAAAA 4787234 28 100.0 32 ............................ AACACATGGTCACCATCACTGTCGATGGCGAG 4787174 28 100.0 32 ............................ ATCGCCCAAAGCGTCAGACCAGCCATCACCAG 4787114 28 100.0 32 ............................ GGCCACTGCGTGGAATCTCGCGTTATGTGCGC 4787054 28 100.0 32 ............................ ACCGGAAAAAATGTAAGGGGTCGCTCTTAGAC 4786994 28 100.0 32 ............................ GACTGGTGGGTTGCGAGGGCGGCGATTGCCGC 4786934 28 100.0 32 ............................ TGCAGATCAGCAACATGTCGCCGCTGACCACC 4786874 28 100.0 32 ............................ GCTGAGGAAGCCCGCATTGTCTGGGTCACCCC 4786814 28 100.0 32 ............................ TTTTCAGTCCCTCAATCGGGACCACAGACGCC 4786754 28 96.4 32 .............G.............. AGTTGGATCAAGTTGCCCTTGGCCATGGCCTG 4786694 28 100.0 32 ............................ AAGCTGGCCGCCAGCACCGCGCGCCATTGCAG 4786634 28 100.0 32 ............................ ATCCTGCCCACGCTGTCCGACGCCTCGGTCGA 4786574 28 100.0 32 ............................ TGCAGGCAGCCTGTCGAATCACCTGGGCCGCA 4786514 28 100.0 32 ............................ AACGGCGTCGATATCGTCCAGGTATATCTGGA 4786454 28 100.0 32 ............................ AACGAACCCGAATGCCAAGCGGGCGCACTGAA 4786394 28 100.0 32 ............................ CTGTCGAAAAAGTCTAATGCGGATGGTGATGT 4786334 28 100.0 32 ............................ AGCTCCGCGCTGGTCATGCCGGGACGCTCCGC 4786274 28 100.0 32 ............................ AGCGGCAAGAACACGCACACCAGCAATGCCAG 4786214 28 100.0 32 ............................ GCTGAGGAAGCCCGCATTGTCTGGGCATACGA 4786154 28 100.0 32 ............................ ACCGAGGCCGTGGGCGGGATGAACGAAGTGAG 4786094 28 100.0 32 ............................ GACGACTTCGGACGCAACGGCGCACGAATCAC 4786034 28 100.0 32 ............................ AACATCCAGCGCGATCTGGAGCGGCGCGCCTT 4785974 28 100.0 32 ............................ ACGCGGGTGAGCGGCCAACGGCCCCGCGTCCG 4785914 28 100.0 32 ............................ CACATCGAACGAATTGAGGGCGTGTGCGTCAT 4785854 28 100.0 32 ............................ AGCGCCGAGTACCACGGCGGGCCGGGGATTTC 4785794 28 100.0 32 ............................ ACGGCCCCACCGCCTGCGCCCCGCCGATTTCT 4785734 28 100.0 32 ............................ TCAACGATGTCTGCCACAGCGCGTCGTTCATC 4785674 28 100.0 32 ............................ TTCCTGGCGCTGCCGAACAAGTTCCGCGCCTT 4785614 28 100.0 32 ............................ TCGCGCTCCAGCGCCCACTGAGCGGCTTCCTG 4785554 28 100.0 32 ............................ GGCCGCCTCCGGGGGTTTGGGGAGATATCGCA 4785494 28 100.0 32 ............................ CGCGCCGTTCGAGGCGATCAAGCCGCTGCACA 4785434 28 100.0 33 ............................ CGCAAGCAGAAGTCGGGCGTGGTTCACTACTAC 4785373 28 100.0 32 ............................ ATGTGCCGCCAGTCGTCCTTGCTCAGCCGGTT 4785313 28 100.0 32 ............................ TCCGACACCTCGGTCCATCCGTCGGTGACGCG 4785253 28 100.0 32 ............................ ATCATGAGCGCGAAGTCGCGGTCAGTTGTTCC 4785193 28 100.0 32 ............................ AGTTTGAACACACGATCCAGAACGAAATCCGT 4785133 28 100.0 32 ............................ ACATGCATTCGCGTTCCTGGATCATGGCCCCC 4785073 28 100.0 32 ............................ TTCATGATAGCGGTCATTGCAGCTTCGAATGG 4785013 28 100.0 32 ............................ AACAGCAGGGCGTGCAGAACCGCGGGAGACTG 4784953 28 100.0 32 ............................ AGTGGGAGGACGCGAAATCGTTGTGGACTTAC 4784893 28 100.0 32 ............................ ACAGGCGAAAACCGTTCTGACGAATGATCGTT 4784833 28 100.0 32 ............................ AAGAAGCGGAAGAGGGCGGCGTGATGAGCGCC 4784773 28 100.0 32 ............................ TTGCAGTGGTTGGAGACTGGCAAGGGTGAGAA 4784713 28 100.0 32 ............................ TTTGGAACTGGGCGCGCGGCAAGGGCCTGACC 4784653 28 100.0 32 ............................ ATTATCGAAACCACACAATCCCAAACGTAAAG 4784593 28 100.0 32 ............................ TTGAGCGCTCACGAACCTGTGCCGGCATCATC 4784533 28 100.0 32 ............................ GTGCAAACATGCTGGAAAAGGCCGATACCACC 4784473 28 100.0 32 ............................ TCCCGCCGCTGCCGGCTGGGGGTGGGTGGCGA 4784413 28 100.0 32 ............................ TGGTCGTCAGTGACAAGTCGGTCGCTCACGCA 4784353 28 100.0 32 ............................ AATCCAAATACTTCCGGATGTGCAGGGGCTTA 4784293 28 100.0 32 ............................ GCTAAGCATGTCGCCGATCGTCTTGCGTGCAT 4784233 28 100.0 32 ............................ ATCACGCACCATCCTTCGCCGCTGCCGGCCGG 4784173 28 100.0 32 ............................ GTGCTGTTGATACGCATATTAGCTCGATTCGA 4784113 28 100.0 32 ............................ ACCACCCAATCCACTGCCACCTCAAGAACAAG 4784053 28 100.0 32 ............................ ATCTTGGCCTCGCGTCCGGCAGCTGTAGGTTG 4783993 28 100.0 32 ............................ TCCTGAGGCCTACATGAGCAACCTCGTCGTTT 4783933 28 100.0 32 ............................ GTGGTGTCGCGCACACGGCGCCACAGCACGTC 4783873 28 100.0 32 ............................ AAAACTCCCTGTCAGTTCAGTCGATCAATCCT 4783813 28 100.0 32 ............................ GGCAGCAATCGAGCCCGAAGCGCCACCCACTG 4783753 28 100.0 32 ............................ AGCGAATACGTGACCCAATCAAAATTCGAATC 4783693 28 100.0 32 ............................ ACATTCCGGAAACGTTTGGGCACTGTTCGTGC 4783633 28 100.0 32 ............................ CAGGGCTGCCTGCCGTGATGGGTTCTTCGCTG 4783573 28 100.0 32 ............................ AAGTGGATGATTTCGCCACCGAAACCTTCGAC 4783513 28 100.0 32 ............................ ACGTGGTCATTGCCATCTCTTGTTGGGGTTGC 4783453 28 100.0 32 ............................ AGACATTGACGCCCACCAGCACGTGCGTCTTG 4783393 28 100.0 32 ............................ ATGCTAGTCGCCTACCCTCACTCTGCCTCCAA 4783333 28 100.0 32 ............................ CATTCCGGAAACGGTTGGACACTGTTCGTGCC 4783273 28 100.0 32 ............................ GGGCCAGTCTTGCCGCCAGCCATCCGCGCGAG 4783213 28 100.0 32 ............................ AGGTGCAAGGGGGAATGTGGATCACCGGTCGC 4783153 28 100.0 32 ............................ ACAGCCGCCATCCACGCCCATGCCGCATCGCG 4783093 28 100.0 32 ............................ AGGAAGTACGCCCAGATGTGATCCGGCATCGG 4783033 28 100.0 32 ............................ TACATCGGCCGGCCGGGCATGATCACCCAGAC 4782973 28 100.0 32 ............................ TCAGGCGTGGCTCCCTGGATTGGCGCGGGACC 4782913 28 100.0 32 ............................ GGTGGGGAAGCGCCGATTCGCTGCGCATCCAA 4782853 28 100.0 32 ............................ CGTGTGAGAAACCGCAGGCATTGTGCGCATCT 4782793 28 100.0 32 ............................ TATCGCGCCGCAGTGCCGTCAGATGGCAAAGG 4782733 28 100.0 32 ............................ CTGTCGCGCCGCGAGAAGTCCCAGATCCGCGA 4782673 28 100.0 32 ............................ TTAACTGAGAATATTTTTACAATTACGTGTTG 4782613 28 100.0 32 ............................ ACGAGGGGTCAGGTCCAAAGGCAGTTAAAACC 4782553 28 100.0 32 ............................ GCGAACTGCGTCCGCTCTATACAGCTGAAGGA 4782493 28 100.0 32 ............................ TTGTCCACGCCGGCGGCCTTGCGCGCCTGGTC 4782433 28 100.0 32 ............................ AGGGCGGTCGGTGGGCGAACGCGGGCAAAGCC 4782373 28 100.0 32 ............................ ACCAGGCGCCCGCGCACGGCATGAGCCGCCCG 4782313 28 100.0 32 ............................ TACGGAAAAATGGCGCGTTGGCTGCGCACGCA 4782253 28 100.0 32 ............................ TGATAGAAATCAGCACGCCGACGCTAAAGGGT 4782193 28 100.0 32 ............................ TGCCGCAGCCAGAGGCCTTCAACTGGCCGGCC 4782133 28 100.0 32 ............................ TGCGGCAATGAGACTGTCGCTTTCGATCCGTC 4782073 28 96.4 32 .......................G.... ATCGGACGCCGAGGCGTAGACCACCGCATGAT 4782013 28 100.0 32 ............................ GCCTGGTAACGCCGGCTGGCGGCACTGTGCTT 4781953 28 100.0 32 ............................ CGCGAGGTCGCGCAATACTCGTTCCTAAAGGT 4781893 28 100.0 32 ............................ TGACCGCGTTGGTTCCGCCGATGACATTTGCC 4781833 28 100.0 32 ............................ TTTTGGCGAGCCTGTGGCCATGAATTCCTAAA 4781773 28 100.0 32 ............................ AAGGCCGAACGCTTCATCGCACTTCTGTACGA 4781713 28 100.0 32 ............................ TGACCGCAGTCTCTGGTGCTTACTACGCCAAG 4781653 28 100.0 32 ............................ TACGATCAGGCTGAGCTCGCTCCAATCATGGA 4781593 28 100.0 32 ............................ TTTTTCTTGCCGCGCGCACGAATTCTGCGCGT 4781533 28 100.0 32 ............................ CATGATCGTGCTGGCGCGGGAGGCTGACCACT 4781473 28 100.0 32 ............................ ACCACATTGCCGGCGGCAAGCGAGACGACACC 4781413 28 100.0 32 ............................ GCGGTTTCAATGTCGATCCTGGTGCATGTGCC 4781353 28 100.0 32 ............................ TCGAACACCTCGGCGGCACGCGCCCACATGAT 4781293 28 100.0 32 ............................ GGCTTGGCCTGCTCTTCGATGTAGTCGATCAC 4781233 28 100.0 32 ............................ AGCTGGTGGCCGGTCCCAACAACACGGTTCGC 4781173 28 100.0 32 ............................ TTGATGGGCGGAATCTCGCTCAACGGCAGCGT 4781113 28 100.0 32 ............................ AGTCCAAGGCGCGGACCGCGGCCGGGAAGACC 4781053 28 100.0 32 ............................ AGTGTTGGAAGTGGCTTGGCAAGGTCAAGGAT 4780993 28 100.0 32 ............................ AGTACCTCGTCGCTTCCGTCGTGGATTAGATT 4780933 28 100.0 32 ............................ CGGCGCGTCGGTGCAGCGAAACTGCCGGTTGA 4780873 28 100.0 32 ............................ AGCGTGGTCCAGGATGATAGCGGCAAAATTCT 4780813 28 100.0 32 ............................ GATGGTGGATGGCAAGGGCAGGCCGCTGGCGA 4780753 28 100.0 32 ............................ GCGAGAATATCGACGCCACTGCGGACGAAAAC 4780693 28 100.0 32 ............................ GCGAAACGTGCGGATGCTGTGAAATTCCGCAT 4780633 28 100.0 32 ............................ CAACTCCCCGACAGCCTGCGCGGCGCGAAACC 4780573 28 100.0 32 ............................ ACGCGGGGTGAGCGGCCATCTTGGCCCCGCGT 4780513 28 100.0 32 ............................ ACGCTGCGCACCCCGCGAGGGGCCTTGATCGA 4780453 28 100.0 32 ............................ AGCCGGCGGCCTTCGAAGCCGAACAGAGACAC 4780393 28 100.0 32 ............................ TACGATCAGGCTGAGCTCGCTCCAATCATGGA 4780333 28 100.0 32 ............................ TTTTTCTTGCCGCGCGCACGAATTCTGCGCGT 4780273 28 100.0 32 ............................ ACGCGGGGTGAGCGGCCATCTTGGCCCCGCGT 4780213 28 100.0 32 ............................ CCGCACGCCGCACCCCATCGGGAAGGACCCGT 4780153 28 100.0 32 ............................ ACGCCGCGCTGATCGTCCCAATCGTGATTCCA 4780093 28 100.0 32 ............................ CCGCACGCCGCACCCCATCGGGAAGGACCCGT 4780033 28 100.0 32 ............................ AGCCGGCGGCCTTCGAAGCCGAACAGAGACAC 4779973 28 100.0 32 ............................ AGGCTTGCGACGATCTTGGCCGTGAGCCGGTA 4779913 28 100.0 32 ............................ AAGCCAGGAACGGGAGCAGCTGCACTGGCACT 4779853 28 100.0 32 ............................ AAAAGGGGACAATCGGTTCCGTGCGGCGCGCA 4779793 28 100.0 32 ............................ TTGCCCACGAAGTAGCGATAACCAATCACCTT 4779733 28 100.0 32 ............................ ACCAGTTGCCGCCGGGGCCAGAGTGGCGCGAT 4779673 28 100.0 32 ............................ AGTACGTGGCATTCCGTGGTTTGCAATGGAAA 4779613 28 100.0 32 ............................ AATCGCGGGCGCCGGGGCCGGCGCGCCCCACG 4779553 28 100.0 32 ............................ GAGGGGGATGCAGCGACTTCGCGCTCGCCGAG 4779493 28 100.0 32 ............................ ACCAGAATGCGCTGGTGCTTATTGATAATCCA 4779433 28 100.0 32 ............................ TGGACCGCAAGCTGCCTCCGTTCGCGATGTCG 4779373 28 100.0 32 ............................ TGCGTCTCGGCCGCCCAATCGCGGAAGCATGA 4779313 28 100.0 32 ............................ GACGACGGTGTACCCGCTATCACGCCCGCCAG 4779253 28 100.0 32 ............................ AGGCCCGTACCGGGCATCTGGGTCGTGCGCCT 4779193 28 100.0 32 ............................ AGCGGGCGAACGAGAGCGCTCAGGCGGTTATG 4779133 28 100.0 32 ............................ ATGTACCAGTTCGCCATCATCCGCTTCGACCT 4779073 28 96.4 32 ................C........... TGATCCAGCGCAAGACCGAGCTGGAATCCGAT 4779013 28 100.0 32 ............................ TTCTAGTAGTGGATCACGTTGGCAAGTCGCAT 4778953 28 100.0 32 ............................ GTCTGCGTCGGTCATCGTAGCATCGGCCACCA 4778893 28 100.0 32 ............................ TACCCGCGCAGCGCGCGCAGCCATGGCTTTCT 4778833 28 100.0 32 ............................ AGACCGAGCCGACGCCCGAGGACATGCAGCGC 4778773 28 100.0 32 ............................ TGTTGCACCATCGTGATCGAGCGGTTCATCAG 4778713 28 100.0 32 ............................ TACGGCGCGGTGCCGGCCGCAGATACAATCCT 4778653 28 100.0 32 ............................ ACCCGGCCAGAGCCGAGGTATCGCACGTTGGC 4778593 28 100.0 33 ............................ AACATCCGCATCGCCGGCACCAGTTGGAACTTC 4778532 28 100.0 32 ............................ CTGAAGAAGCGCAAATTGCTTGCGGACACCCT 4778472 28 100.0 32 ............................ GAGCTGGCCGAGGGTCTGGAATCGGTGGCGCA 4778412 28 100.0 32 ............................ ATGGCGTTTCGCCACCCGCCAACGTGGAGCAC 4778352 28 100.0 32 ............................ ACGCGCAATGCGCGACCGGGCGTGAGTGCGAA 4778292 28 100.0 32 ............................ TTGATGCCGAGCAGCAGATGCACGCCGGGTTC 4778232 28 100.0 33 ............................ AGTACAAGGACATCGGTTTCGCCCAGGATCTGC 4778171 28 96.4 32 ..........C................. CACAACCACGGTTGAGAGTGGGCGGCCCAGGC 4778111 28 92.9 31 .............C..........A... ATCACCGCGTAGCCGCCGACCTGACCGACCA 4778052 28 82.1 32 .G......T..TA.........T..... ACCGGTACAGCAGCGGGCGCGGGTGGGACAGA T [4778048] 4777991 27 78.6 0 C..-.......T.C......AC...... | ========== ====== ====== ====== ============================ ================================= ================== 190 28 99.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGTTAGATACAGTGATGGCCCTGCCTTGGTTGCAAGGCATGAACGATCATCTGGCAGTATCGGACATCAACGCGGTGCCCGCTGACGCACAGCATCGACAAGTGACTCGGGTACAGGCCAAAAGCAGCCCGTCGCGCCTGCGCCGCCGGGCGATGCGGCGTCACGGACTGGATGCGGAAGCGGCGCTACAGCGCATCCCGGATTCGGCCGCCGAACAGCTGCAACTGCCCTTCGTGGTCCTGGGCAGCCGCAGCACGGGGCAACCGTCGTTCCCACTCTTCATCCGGCAGGGTCCACTGTCGTCTACCGCACTACCGGGCAGCTTCAACAGCTACGGCCTGAGCCAGGACGCCACCATCCCCTGGTTCTGACCCTTTTTCCAAGAGCACCACGCTTTTCCTTAAAATCAACGACTTGGCGGGCCTCCTGAAAAAAGGGGCCCGTTCTTTTTGAGACGCGCTTTTCCTGTAACTTCAACGGGTTGAGTGACTTTTTGTCTT # Right flank : TCTGCCCCGCAGGCATTGCTCGATGCATCGTATTTCACTTCGTGCAGATAGCTTGAGAGCCGAATTGGTAGGCGTTGCGGATTGACGTAGTTAAGCGGTGTAGACCATGCAGAAAGGCAAATCAGGATATTGACCAGCAGACATAAAGAGCGCAGCTGTGCAGATAGCGAAGCTAGCGATGCAGGCGAATCCATAATCGACTCCATCAGCAAAACGGGATAGCCGATTGGCTACCCCGTCGTGACTGCTCGGCTATTGCTTCTGGAAGATCACTCGGTCAACCCACGGTTTTCCAGCAGCGCCTTGACGCTGGGATCCTTGCCGCGGAAATCGCGGTACAGCGTGGCCAGGTCGACCGTGTTGCCGCGCGAGAGGATCTTGGCGCGGAAGGTGTCGCCGTTCTTGCGGGTCAGGCCGCCGTTTTCCTTGAACCATTCGAACGCATCGTCATCGAGCACTTCCGACCAGAAGTACGCGTAGTAACCGGCCGAGTAGCCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //