Array 1 44873-46914 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEU01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 6623 NODE_9_length_170674_cov_5.41863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44873 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 44934 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 44995 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 45056 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 45117 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 45178 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 45239 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 45300 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 45361 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 45422 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 45483 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45544 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45605 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45666 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45727 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45788 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45849 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45910 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45971 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 46032 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 46093 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 46154 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46215 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46276 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 46337 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46399 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46460 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46521 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46582 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46643 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46704 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46765 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46826 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46887 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63047-64401 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEU01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 6623 NODE_9_length_170674_cov_5.41863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 63047 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 63108 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 63169 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 63230 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 63291 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 63353 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 63414 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 63475 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 63536 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63597 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63658 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63719 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63780 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63841 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63903 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64006 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64067 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64128 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64189 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64250 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64311 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64372 29 96.6 0 A............................ | A [64398] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //