Array 1 4730-5978 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDDT01000061.1 Escherichia coli strain CMNB27c NODE_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4730 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 4791 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 4852 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 4913 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 4974 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 5035 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 5096 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 5157 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 5218 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 5279 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 5340 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 5401 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 5462 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 5523 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 5584 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 5645 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 5706 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 5767 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 5828 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 5889 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 5950 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCATTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18012-17026 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDDT01000014.1 Escherichia coli strain CMNB27c NODE_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18011 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 17950 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 17889 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 17828 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 17767 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 17706 29 96.6 32 ............T................ CGCCGCATTAATATTGATGACCAATATTCATT 17645 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 17584 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 17523 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 17462 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 17401 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 17340 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [17314] Deletion [17300] 17298 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 17237 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 17176 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 17115 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 17054 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //