Array 1 1787-231 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAQ01000040.1 Escherichia coli strain 38-1BK entry40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1786 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1725 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 1664 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 1603 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 1542 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 1481 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 1420 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 1358 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 1297 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1236 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1175 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1114 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1053 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 992 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 931 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 870 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 809 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 748 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 687 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 625 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 564 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 503 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 442 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 381 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 320 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 259 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42101-39510 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAQ01000028.1 Escherichia coli strain 38-1BK entry28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42100 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42039 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 41978 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41917 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41856 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41795 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41734 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41673 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41612 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41551 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41490 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41429 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41368 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41307 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41246 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41185 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41124 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41063 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 41002 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40941 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40880 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40819 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40758 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40697 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40636 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40575 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40514 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40453 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40392 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40331 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40270 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40209 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40148 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40087 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40026 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39965 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39904 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39843 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39782 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39721 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39660 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39599 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39538 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //