Array 1 9430-12630 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOA01000139.1 Acrocarpospora phusangensis strain NBRC 108782 sequence139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9430 29 100.0 32 ............................. GCGGCCGTGGCATTCGGGGCAGTGCCAGTCCC 9491 29 100.0 32 ............................. GCATCAGGTCGGAGATGGCGGCGCTTCGGCGC 9552 29 100.0 32 ............................. CCTGCCCCTACTTCCGGCCCCGGATCCTTGAG 9613 29 100.0 32 ............................. GGTATAGCGCCTGCATCCGCGCCTATCGTCGT 9674 29 100.0 32 ............................. ATGACTCATCTCCCGGAGGCCCGACCATTCGT 9735 29 100.0 32 ............................. TCAGCCCCTTCCGACACGCCGAGTGGTAATCT 9796 29 100.0 32 ............................. CCTCAGCTTGAAGGCGCGTTGGGCTGGTTGTT 9857 29 100.0 32 ............................. CAGCACGCTCATCTTCCACAGCCCTGACATGG 9918 29 100.0 32 ............................. CGGCTCCCCGACGAGTCCGGCGTACGCGGCGT 9979 29 100.0 32 ............................. GTGAGCCGCTCCGATTGGCTGCGCGAGCTGGC 10040 29 100.0 32 ............................. GCCCGCAGGCGCCACTCCCACGACCCCAGCAC 10101 29 100.0 32 ............................. CGGCCCAACATCTACGACCTGGGCATGCACCT 10162 29 100.0 32 ............................. CGACTGGGCCGTCGTCGCGCGTGGGTGCGGAA 10223 29 100.0 32 ............................. CCGGATAGGGAGCAGGCCACGGCCAGGGAGCC 10284 29 100.0 32 ............................. GCACCGTCCACCACCGGCTGCCGCGCGGCATG 10345 29 100.0 32 ............................. CTACCCGGACGGGGTCTTTGACGCCTGCGATT 10406 29 100.0 32 ............................. TCTGGCAACCCAACCAACAGGGTCTTCAGCGG 10467 29 100.0 32 ............................. CCGGATAGGGAGCAGGCCACGGCCAGGGAGCC 10528 29 100.0 32 ............................. CGGAAGTGGATCCGCTCAATCCGCCACCTCCG 10589 29 96.6 32 ............................A ACAAGGTTCACATCCCAGGCGCGCAGCCTCCC 10650 29 100.0 32 ............................. TCGCCGATCGCCGCCATCCCTTCCGGGCTCTC 10711 29 100.0 32 ............................. CCGGTCTTGGCCGGATGGGCACCTCGATCAAA 10772 29 100.0 32 ............................. TTGTGGGTGCCGGTCGCGCCGCTGCTGGACAG 10833 29 100.0 32 ............................. GTCCGATAGATCGGATGGCCGCGGCCAGCACC 10894 29 100.0 32 ............................. CACCACCTGACCCGGGCGGGCGTACACCGGGA 10955 29 100.0 32 ............................. ACCCGGCACGCGGCGCTGGTCGAGGCGGCCAT 11016 29 100.0 32 ............................. CCACCGCCAACGCAGCGGCCACTGAGGCAGGA 11077 29 100.0 32 ............................. ATCCAGCCGTCCGCTTCCATCTGGGCGCGGGC 11138 29 100.0 32 ............................. CTGATGGAGTGGCAGTGCGCCCGGCTGGGCGT 11199 29 100.0 32 ............................. TCCTTCCGCCGGAACAGGTTGCCTTCGGGCGC 11260 29 100.0 32 ............................. CCACGGCCCGCGCCTCGTCACGTTCGGCCTCA 11321 29 100.0 32 ............................. TGACCAAGTAGAGGCGCCTGAATTCGCCGGCC 11382 29 100.0 32 ............................. CGCCTGCTAACGCCGCGCTAGCCCCACAAACC 11443 29 100.0 32 ............................. CTGCCGAGCTGCGGCACGGTGTAGATCCAGCC 11504 29 100.0 32 ............................. AACCTCACGGCCGCACCTCGCCCTCGACCGGA 11565 29 100.0 32 ............................. TTGTTCCACACGCCCTGCAGGTTGGCGGGCAG 11626 29 100.0 32 ............................. TCGGCCGCGTGGCGTTGCAGGTAAGAGAAATG 11687 29 100.0 32 ............................. GGGTCAGGAATGTCCAGAACCATTCTCGTTGA 11748 29 100.0 32 ............................. TTACTGAGAAGTGTGTGACGACACTTGACAGG 11809 29 100.0 32 ............................. CGTCCGGCGCCGAGACGCGGGCCTGGTTGTGG 11870 29 96.6 32 .................A........... TCGTCGAGCTGGCCGGTGTCGATGCTGGCGCC 11931 29 100.0 32 ............................. CCCCTGCCAGGGTTTCACCTGGTCAGGGGCTC 11992 29 100.0 32 ............................. TCTGTCAGGGTTCTGTCAGGGTCGCCATTTCC 12053 29 100.0 32 ............................. GTGGATGGCTATGGAGTCCGACATACCTGGTA 12114 29 100.0 32 ............................. CCGTCTGTGCTCTGGTGATCATGTCTCTCTAT 12175 29 100.0 32 ............................. CGTGGATCTCATCACCACTGCCTGTGAGGGCG 12236 29 100.0 32 ............................. CCGATCGCCGAGCTGCACGCGGACGACGGCCA 12297 29 100.0 32 ............................. CCGCCGGTCGTGCCCGAGCAGCCGGTGCCCGT 12358 29 100.0 32 ............................. CTGGTCAGATGGCAGACTACTGTTCGGCATCA 12419 29 100.0 32 ............................. CCACTAGAGCATTCTCCGCATGGAGATCCAGC 12480 29 100.0 32 ............................. AAGCCTGCCTGGTTCGATGTTCCGGGTACGCT 12541 29 100.0 32 ............................. GTATTGCCCGTACACAGATGGCATTCATGGAA 12602 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 53 29 99.9 32 CTGCTCCCCACGTCCGTGGGGGTGAACCG # Left flank : TCGGAATCCCCACGTCACCAAGACTGGTAAGAGATTCACGTTCAGGCGCCCAGATATCAGCGTGCTGTGGTGCCTAGAACCCGGGGCGAAACTCTGGTCAAGTGACGTTCTGGTCGCTGTCGAGATCACTTCGTCCGACGATGAGGTCGACTTCAACGATAAGCGGGCCGAATACGCCGCTCAGGGAATCCCCGTCTATCTGATCATCGTTATGGACGGCGATCGAGTCGGCTCGATAGACGAATACCGCCTCGATTGGAGCTGCCGAAATTACCAAATGGCTGCAGTGCACCGAAGCATGCTTGTCACCGAGCTACCTGAAGGGATGAAGATCGATATTTCCTTCCCTGATCTAGAACGAATCTAACGACAGTGACTACTTCAGCCCGTACCAACGATAATTTCCCAAGCCCACGTACCCCCATCCCCCTTGGCGATAGCCGACAAAGCCCGACATCCACATTTGCGCTGCTCAGCTGAGTTTCCCCAGCTCATGAAGT # Right flank : TCGTTCAACATGTACCGCTCTACCCTGAAAGCCTGCTCCCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGTCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4428-2818 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOA01000171.1 Acrocarpospora phusangensis strain NBRC 108782 sequence171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4427 26 89.7 32 ---.......................... GCCATTGTCCTTCAGAAATGCGATGGCAGGCG 4369 29 100.0 31 ............................. CGCTCTCCCACGAGTGCGCGGAGAATGAGCC 4309 29 100.0 32 ............................. TAGCCAAGTGGCTTAGGCTGCATAACCTGCCC 4248 29 100.0 32 ............................. AGGTCGCCACCGACGAGTTCGTGCGGCTCTCC 4187 29 100.0 32 ............................. GAGCCGTACGCCTGGGCCATCGCCCGCGGCGG 4126 29 100.0 32 ............................. GCCGCTACGCGGTCATGTACCCGGACACGGGC 4065 29 100.0 31 ............................. GTTGCCCGACCCGCTCGGCCTCCTGCTTTGC 4005 29 100.0 32 ............................. CCCACTGCGGACGTCGATCGAGACGGGTACAC 3944 29 100.0 32 ............................. TAGCCGATGACCTCGCTGTCGAGCGCGTTCCC 3883 29 100.0 32 ............................. TCGTGCTCGATCTGCTCGCGCTCGCTGTTGAT 3822 29 100.0 32 ............................. CGGAGCCATTCGGCCATGTCCTCGCTCAGCTC 3761 29 100.0 32 ............................. CAGACCAGCCACAACCTCCGCTTTAGCTGGGA 3700 29 100.0 32 ............................. TCTTCGTAGTAGCTGGTACTACGCCGCCGCAG 3639 29 100.0 32 ............................. TTCTTACTAGATCCCGAGATGGTTTCGGTTGC 3578 29 100.0 32 ............................. ACCCACACAGGGCACGGTTGGCCATTGCTACG 3517 29 100.0 32 ............................. TGGAAGCTCTACCCGAAGAACAGCAGTAGCCG 3456 29 100.0 32 ............................. GAGGTGGACAGCGCGACCGCCGACCCTGCCGA 3395 29 100.0 32 ............................. AGGGCGGGGAAGCGGGCGCGGCCTTCGTTTTC 3334 29 100.0 33 ............................. ATCGGGTGGCAGCTGGGGCGGGACGAGATCGGC 3272 29 100.0 32 ............................. GCCGCTCCTTGTCCCGCTTCTCGAAGAACATC 3211 29 100.0 32 ............................. AACGCCTCCGGCCGCGAGTTCGCCGACATCCG 3150 29 96.6 32 ............................A TGCATGGTGGCCGGCATGTCCGGTGATCCGGA 3089 29 100.0 31 ............................. CTCGACGGCCAGACCGCCACCGTGGACGTGG 3029 29 96.6 32 A............................ CTGCTGAAGGACCAGCTGGTGTTCGCGCCGCC 2968 29 96.6 32 A............................ ACCCACGCCCGCACCACCAACCTGATTACTCG 2907 29 96.6 32 ...........................T. GATCCACGCATCTACGCCTTCGTGGTCGAGAT 2846 29 75.9 0 GC.A........C.T........A..T.. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.2 32 CTGCTCCCCACGTCCGTGGGGGTGAACCG # Left flank : | # Right flank : CCCCGTGGGTCAGCTCCAATTCTGTGTCCGCGCACAAGTTTTCGCAGGCGGACTATCCAAGGGTTGAAGTGGATCTGCGTTGTCGATCACTGCAGGGCAGCGGATCAGTGGAACGCCTGAACAGTCCCTCCGCCCTTATGCATCGGTGTCGAGCACTTTCGTGCCTCTGGCTGCGGTTTCTCTAGCCCAGCGGTAGTCGGCTTTGCCAGCAGGTGAGCGGACGAGTTCCTCCACGAACACGTACGTCCGGGGCACCTTGTACCCCGACAGTCGCGCACGGCAGTGGGTGTCTAGGGCTTCCTCGGATGGAGTGGATCCAGAGGTGGGCTGGACGACGGCGGCGACGCGGTAGCCCCAACGGTCGTCGGGGATGCCGGTGACGACGGCGTCGAAGACGTCGGGGTGGCCTTTCAGGGTGGCTTCCACCTCTTCGGGGAAGACCTTCTCACCGCCGGTGTTGATGCACTGGGAGCCGCGGCCGTAGACGCGCATGGTGCCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGTCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 1184-2768 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOA01000037.1 Acrocarpospora phusangensis strain NBRC 108782 sequence037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 1184 29 79.3 123 A...........T..........TGGG.. CTCTCGCTGGGCAATGTGCCGGAAGCCGACGCTCGCCGCGCCCATGACCGCTAGGGCGCATCACCGACAAAACCGGACATCCACATTTGCGCTGCTCAACTGAGTTTCCGCAGCTCAAGAAGT C [1188] 1337 29 100.0 32 ............................. CCCTCGTCGGGCGACGCGTCCTGTGTCGCCAC 1398 29 100.0 32 ............................. CAGACCGGCAACCCGCTGCTACCTGTCGTTCG 1459 29 100.0 32 ............................. ATGATCCCAATCTGCGGGGGTAAGGCCCCGCC 1520 29 100.0 32 ............................. TCTTCCGGCATCATGCTGCCGAATTTGTAGTC 1581 29 100.0 32 ............................. GTCAGCGTCCCGGCTGGTTGCGGCGTGGACCG 1642 29 100.0 32 ............................. GCCGAGACGATCAACGGCGAGGTGGCGAGGGT 1703 29 100.0 32 ............................. ACCTCACAGAGGCAGAGAAGAGGAAAACATGA 1764 29 100.0 32 ............................. GAACTCCTCCAGGCCGAGATCACCGAAAACGG 1825 29 100.0 32 ............................. GTCGTCGACGGCCTCCTCTTCGCTGGGCTGAT 1886 29 100.0 32 ............................. TTCGAAACCGAGAATGGTCCGGCCCCACTCCT 1947 29 100.0 32 ............................. CGTTCGCTCACGAGGACGACCGGGTCGAACAA 2008 29 100.0 32 ............................. TTGAGGAACTGTTCCGCCAACTCCTCTAGTAG 2069 29 100.0 32 ............................. TGTCCAGGGGTGAGGTAGTGCCTAGTGGATTG 2130 29 100.0 32 ............................. GCAAGGGTGCGAACGTCATGCGCCGTGTTGGT 2191 29 100.0 32 ............................. GTTCTAGCGGCTAGGGTGAGGCCCGTCCAATG 2252 29 100.0 32 ............................. CGAGACATTCAGCAGCCTCCCGCGATCACCAG 2313 29 100.0 32 ............................. CCCGCCCCCGCGCCTTCCCCTCCCACCGACCT 2374 29 100.0 32 ............................. TCTTCTGGGATGCGCAGGGAGCGGTTGAAGCA 2435 29 100.0 32 ............................. AGGAGGCGGCGGCATGACGTCTACACGCCGCG 2496 29 100.0 32 ............................. CAGTCCGGCGAGTACAAGCAGGCCAAGGCCGA 2557 29 100.0 32 ............................. GAGATCAGGATGCGCACATGCGGCGCGGTCAA 2618 29 100.0 32 ............................. CGATGGCGCGAGGCCGTCAAGGGCGACCCGGA 2679 29 93.1 33 ...T..........T.............. GGCCCAGCAGGAGGGCCGCCGCCACCTCACCGA 2741 28 89.7 0 ..........T......-......G.... | ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 25 29 98.5 36 CCGCTCCCCACGCCCGTGGGGGTGAACCG # Left flank : TCTCTACCCGCCGGAGTCAACTACGGCGACAGCGCCCTCGGGGAGGCCGAGATCCCATGGTGACACTCTCTGGCTTCTCTACCTTGGGAAGCGAAGCCGACGCAGGAGCATCACCATGGCTTCAATGATCGTCATCTCCACGACCGCCGTCCCCGACCACGTCCGAGGCGCCCTGACTCGGTGGCTCATCGAGCCATCCCCTGGCCTGTACGTAGGCACTGTCTCCGCCCGCGTCCGAGATCAACTCTGGGCCGCCGTCACCGGCTGCGTCGCCGACGGCGCAGCCACCTGCCTCCATCCGGCTGACAACGAACAAGGCTTCATCATCCGCACCGCCGGCCAACGCCGCCGCCAGGTCACCGACTTCGACGGTTTACAACTTGTGCGCTTCCTCCCCGAACAGCCCTCCGAGACATGACCCTGCCCGGCGTCCTACAACACTTCCAAGCCAACCACCGACCCTATCCGCCCAGCTCAACCGATTTTCCAGCTCAGAAATC # Right flank : GCGGACGTGTAGGTACTACATATCTTCGATCTCACGCTTCCACTCCTTCGGGGAGCGAACCATCCTGCCTGCCGTTGGTGCTGCGGTGGTGGACCGCTCTCCGCACTCGTGGGTAACGTACGCGGATGGCGTCGATGTTAGGTGTGGGTTTCTCCTGTTAGGGCTGCGGTGGTACCGAGGCCCAGATAGACGAGGCCGCTGCCAATGTCCAGACGGCGTCTGGCTGTGGGTGAGCGGCGAATGCGGCCGGCGATTGAGGCGGCCAGGAGAGCGTAGGTTCCGTCGCTGGCCATGCCGAGGATGATCCAGATTGCGCCCAGGAGGACAATCTGGGGGGCTATCGGGCCGGCGGCGGGGTCGGCGAAGTGGGGGAGGAAGGCCAGGAAGAAGATCGCTGTTTTGGGGTTGAGGACGTTGACGACGAAGCCTTCGCCGAATAGGCGGGAGTGGGAGGCGGCGGTCGGGTTGGTGGTTTCTGGATTTGCGTGGTTCATCAGTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //