Array 1 1673595-1672895 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_014752.1 Neisseria lactamica 020-06, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	================================	======================================	==================
   1673594	    32	 100.0	    34	................................	AAGTCATACAAAGTTTTAGGTGAAGGAGAGGGAA    	
   1673528	    32	 100.0	    34	................................	ACTATAACCGTGCTTGATTCCAGCAGGCAGTTCG    	
   1673462	    32	 100.0	    34	................................	AATAGCCTATAACGAGTATTTCGGTTATCCCTAC    	
   1673396	    32	 100.0	    35	................................	CAGAACTTACGATAGAAACAACGCCCATTCCCGAA   	
   1673329	    32	 100.0	    35	................................	AATATCTGACATCTTCGGCGTTTGAAACATCAAAC   	
   1673262	    32	 100.0	    34	................................	ATATTTCAAATTTAAAACATTACAAACAGTGTTA    	
   1673196	    32	 100.0	    35	................................	GGCAAAGTGAGCAGCAACATTCGGACAGGCCGCAA   	
   1673129	    32	 100.0	    34	................................	CATACCTTGTGGCAATAGCCTTGGCTTGAATAGA    	
   1673063	    32	 100.0	    35	................................	TATTTATCAAGTATAGTGCACCGAAAACGGCGCAC   	
   1672996	    32	 100.0	    38	................................	TGCCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGG	
   1672926	    32	  90.6	     0	..........T.G.......A...........	|                                     	
==========	======	======	======	================================	======================================	==================
        11	    32	  99.1	    35	TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC	                                      	       

# Left flank :   ATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAGAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTTGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCAGTCGATATATTCAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATTTGGATTGTTCTTTAACAATCAGGATATTTGTAAATGTGGGTATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT
# Right flank :  GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATGTCTTTATTAAAAACGGCTTGATATTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATAGGGAAAATGTAGGGATGCGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGTGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAAACCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAACCGGCCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGACGGAATACTGCTTTTCATCGTGAAGATGGCACGGAAATTCCCGATAGC

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.20,-5.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//


Array 2 1895319-1894689 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_014752.1 Neisseria lactamica 020-06, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1895318	    36	 100.0	    30	....................................	CAAACGCGCCGGTATTGCCCACAAAGTCAA	
   1895252	    36	 100.0	    30	....................................	CCAAGAGATAGTGAATTGCATGGTACAACT	
   1895186	    36	 100.0	    30	....................................	TGCAGCTGGATTCTTTTCAACGCAATTCAA	
   1895120	    36	 100.0	    30	....................................	AGTCATCTCAGAATCAAGACCCCATTTCGC	
   1895054	    36	 100.0	    30	....................................	CATTGGACAGTTTCTGCATACGCGACAATT	
   1894988	    36	 100.0	    30	....................................	AATTCAATCTGACGCAATTCTAGACGCACT	
   1894922	    36	 100.0	    30	....................................	GCGAAAGCGAACAAAGACGCGCATTGATGT	
   1894856	    36	 100.0	    30	....................................	ATATTCATCTTTGCCATTGCCAACAGTAGC	
   1894790	    36	 100.0	    30	....................................	GCGCGGTGTGTGGTTGCCCGTCTATGGCGG	
   1894724	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        10	    36	 100.0	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGCTGCGGCAAAATAGAAAACCGCCCTTAATAAGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCCAGCATCAATCGTAACAGTCAATTGCAAATTGCCTACCTTAATAGAGATTTGCATTTGGATGTTTCCTGTAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTCTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCCTGAACCTATCTCATAAAGTTCCTTATATATTA
# Right flank :  ACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.5   Confidence: HIGH] 

# Array family : NA
//