Array 1 156021-161448 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMLJ01000001.1 Marinomonas arctica strain CGMCC 1.6498 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 156021 28 100.0 32 ............................ TAGCTCTTGAATTGCGTTCTCGTTTCCCTGCT 156081 28 100.0 32 ............................ TAACACTTTGCGACCTTCCTGAAAGATGTATT 156141 28 100.0 32 ............................ TTGCACGCAAATTTCAGCATTCTAGAAATTTA 156201 28 100.0 32 ............................ ACATTCTTCTTTCCAAGTAGATCCATAATGAA 156261 28 100.0 32 ............................ ATTTATCTAAATCAGCATAAGAAAGCGCCACA 156321 28 100.0 32 ............................ TAAAAAGGTGACTAAAAATGGCTAGAGGAATT 156381 28 100.0 33 ............................ TGCAAGCTAACCCAACAACTGCAACAATTTACT 156442 28 100.0 32 ............................ TGATGAATCTGGGTGCGTCTGGGTTGATGTAG 156502 28 100.0 32 ............................ CCAATCGTAAGTATCAATAAAATCACCGCAGC 156562 28 100.0 32 ............................ TCTATCATTAGGTATGTAAAAAGAAATATTTG 156622 28 100.0 32 ............................ ACTTTGGAGGGGTATTTTCGAGGCTGCAGCTG 156682 28 100.0 32 ............................ TGTCTGTTTTCTAAACCTCGGTTAAGTTGTGA 156742 28 100.0 32 ............................ TGAATCTGCGCGTCCGTAGCTGTAACGTTTGG 156802 28 100.0 32 ............................ ACTACCTGCATTTTTACAGCGGTGAAACCGCA 156862 28 100.0 32 ............................ TAACGGATTATTTGCTGGCTATCGGGCCATGA 156922 28 100.0 32 ............................ AGGCATTGACGACACCTATGGATTTTTCGCTC 156982 28 100.0 32 ............................ GCAACGCTATTGCTCAACTGAGCAACCAAACA 157042 28 100.0 32 ............................ GTACACACGCTCACGACAGAAAATAGATATGG 157102 28 100.0 32 ............................ TTTAATCGTCGCACGCACCCCCAAACCATCAC 157162 28 100.0 32 ............................ AGACACGTATCTTATGTGTCTTTCCGATTATG 157222 28 100.0 32 ............................ GTCAATCCGGAAACCATCCATGAACCTGTCGT 157282 28 100.0 32 ............................ AAACAACTATTAATAATGAAATGTTTACCTGC 157342 28 100.0 32 ............................ TGACACGTCAACTTTTGGCGCTTCAACGACAG 157402 28 100.0 32 ............................ TGCAATCATTGAAGCGTAAGTGTGGCCTTGTG 157462 28 100.0 32 ............................ ACGTGTTGCCAGTGTGACACCTCACGCCAATT 157522 28 100.0 32 ............................ TGTATTTTAGTTAATGTTTTATGTCTGCGTTG 157582 28 100.0 32 ............................ TGCATAAAATGCTTTACGGTTAAACTCAACGT 157642 28 100.0 32 ............................ TTTACCGTTCCAAGCACCACGTTTACACCATT 157702 28 100.0 32 ............................ AATCACTAATGGCATGAAGCCAATAAGAACAA 157762 28 100.0 32 ............................ TGAATACCGTAGACTAACAGCTAGCGGTATCA 157822 28 100.0 32 ............................ TTTTAGAAACAACAAGGAAAAGATAAAGCCTG 157882 28 100.0 32 ............................ GATATGACCCCATTCACCACCGCTGGTTTCTG 157942 28 100.0 32 ............................ TGTACTTATAATAAAACGTTCGTACGAGTATA 158002 28 100.0 32 ............................ GTTTAAGATTGGCAAAAAAATCTTCTCATACA 158062 28 100.0 32 ............................ ATCTAATACATTGCAACTAATTAGTACAAAAT 158122 28 100.0 32 ............................ AGTAATCACAAGCATGGGTACACTAGAAGACA 158182 28 100.0 32 ............................ CAGAGTAATTTTCGAAGATACACTTCGGGGCA 158242 28 100.0 32 ............................ GAACCGCATGGAATGCAGCATCACCCTCGCTA 158302 28 100.0 32 ............................ TAGTAGATAATGCCCGTGGCGGCAGTGTCTTA 158362 28 100.0 32 ............................ GCAGACTTAAAAGCCTTGCTGTCCGTAAAGGT 158422 28 100.0 32 ............................ TCGATAATTAGTATCAAGCTGGGTATAAATTT 158482 28 100.0 32 ............................ TGATTGCGCGCCGTAAACTTGGCGTGATTCTT 158542 28 100.0 32 ............................ ACTATATCGGTCAATACATCGCCTGTCTGTCT 158602 28 100.0 32 ............................ TAATGGAGGGTGAGGCGTTGAGCCTTAACTCT 158662 28 100.0 32 ............................ TCGCGCTCTAGCCACTCGATAGAGCTAAACAC 158722 28 100.0 32 ............................ TCATCAATCCATGCTATTAATATTCGAGCCTT 158782 28 100.0 32 ............................ ATTAGGGCGCTTCCAAAGCATAAAACCAAAAA 158842 28 100.0 32 ............................ TACTTGATGTAACTGGTCTGAGTGACACCATC 158902 28 100.0 32 ............................ AAAAACAGCGTCGTCGTCAGAATTGCCTTGAG 158962 28 100.0 32 ............................ AGACCTCAATCGAGACGTACCGAATTCCATCC 159022 28 100.0 32 ............................ TAAGTTACTGACAACAAACGATTTTTTGTTTT 159082 28 100.0 32 ............................ TACAACTATTGATACACCTTTCTCGTCTTTGA 159142 28 100.0 32 ............................ AGCACGACTTAATGCTATTCGACCACACGACA 159202 28 100.0 32 ............................ TTTATACGTAGAAGTGGCTGAAAAACAAGGTC 159262 28 100.0 32 ............................ TTTTACTGCCATGAATCATCATGTTGCTAAAC 159322 28 100.0 32 ............................ AGAATGTTCATACGGGCAGACGAGCCGCCCTT 159382 28 100.0 32 ............................ TATTGCCTACTGACGTGTACATTGGCCTAATC 159442 28 100.0 32 ............................ TATGCACTTAGCAGTACTTAAAGCAACTAAAT 159502 28 100.0 32 ............................ GTTATTTGGCCCCATACTTACAACAATTTCGC 159562 28 100.0 32 ............................ TTTTTCATTGCAGGTATAAAAGTTTTCAGTAT 159622 28 100.0 32 ............................ TTTTGTATTCCCAAGCCTTTGCTTTGCTATGA 159682 28 100.0 32 ............................ TGAATGATAAAGCGGTAATTAAATGTTATCGG 159742 28 100.0 32 ............................ TGTAGTTGGACGGGCGCGTCTTGTTCGGTAAT 159802 28 100.0 32 ............................ TTCACAAAGAGCTTGTTCGATGGTTTCGTCTG 159862 28 100.0 32 ............................ CGTGGACTTTGTTCGTTGGGTGAAAAACGATT 159922 28 100.0 32 ............................ AAACCAACAAAACGCGCACATGCTGGAAAGTC 159982 28 100.0 32 ............................ TCTTGTTTAGTGTCGAAGACAACAGTTTGCTC 160042 28 100.0 32 ............................ AGATACTTCACACTGATATACGCATAAGAATA 160102 28 100.0 32 ............................ CTCTCCAAGTAGATCGAGCAAGACCTTTTAAG 160162 28 100.0 32 ............................ TTTAGGTATCGGGGCTTTTTTGTGCCTTGACA 160222 28 100.0 32 ............................ TGTTCAACGTCGGATGCTTCCCATGACTTACT 160282 28 100.0 32 ............................ CTTTATGGTCAGCACTTGGCGCCCACGCAAAA 160342 28 100.0 32 ............................ ATTATCGACAACCCGAAAAAAGACCAAATCGA 160402 28 100.0 32 ............................ GTCAGGACGATTACCAAAGGGCTTCCCGTCTA 160462 28 100.0 32 ............................ TACTGATAAATATAGAATTATAAAAAAATAAA 160522 28 100.0 32 ............................ TAAAAACCGTGGGTGAGAATTTTATTAATCTC 160582 28 96.4 32 .........A.................. TCCAATAAAAGCACTGTACGCAGTACCAGCCT 160642 28 100.0 32 ............................ ATGAGTACGCACCATATTAGCGGAATGGATGT 160702 28 100.0 32 ............................ AGCACGTCACCCGTAAAAGTCATTTGCAGGCG 160762 28 100.0 32 ............................ AGCACGTCACCCGTAAAAGTCATTTGCAGGCG 160822 28 100.0 32 ............................ AAACCCAAAACTATTGTTTAGCGCCTCGCTAG 160882 28 100.0 32 ............................ TGGAACGACAAGCCCAACGACAACCGCCGATT 160942 28 100.0 32 ............................ TTGGCTATCTGTAAATGTAAGCCCTAACGTTT 161002 28 100.0 32 ............................ ATTAACAGTAAACATAGGCGTACGAACAACGG 161062 28 100.0 32 ............................ AGTCAAAGAATTTTTGAATTTCGATCAATAAT 161122 28 100.0 32 ............................ GCAAGAAGGTCAGGTGTATGTGACTTCGCTTT 161182 28 100.0 32 ............................ GAACCCGCGACGGAAATTAGGATTGTGACAAC 161242 28 96.4 31 ....................T....... AAAAATGGCTTGGGAAAGTTGAATAGGTGTT 161301 28 100.0 32 ............................ TCTTAAAATATGCGCTATCACTTCATCCGTCC 161361 28 100.0 32 ............................ CGTCAAAGAATTTTTGAATTTCGACCAATAAT 161421 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 91 28 99.9 32 GTTCGCCGCCGAGCACGCGGCTTAGAAA # Left flank : AAGATTAGAAAAGTTGATGGCGCTTTCTTGGTTAGGTGGTTTATCAGGCTATTGTGCATGTAGTGATATAAAAATCGTTCCTGAACATGCCTTACATAGGCGTGTTTCCCGTTGGCGTCCTAATATGAGTCAATCGCACCTTAGACGATTAATAAAGCGAGGTTCAATTTCAGAACATGAGATAAAGGCTTATAAAGCCAAAATGTTTGCTGAGCAGATGACTACCTTGCCTTATCTTGAAATGGAAAGCACTTCCAATAAAAATCATCATCGACGTTATATTCAAATGACAGATGTTCAAGATAGTTCACTGGTTGGTGATTTTGACTATTTTGGCTTGAGTAAAGCAGCAACAATTCCTTGGTTTTAACCAATGAAAAAAGCTCTTTAAAAATATCCTTTAAAAACAGTAAGTTATAACATGCAGAAAAAACATAGGTAAAAACGCTAATTTTTACCTAACTGCATGTTGTAACTTATTTTTTTGCGAATAAACTATT # Right flank : AAGCACATTTTGTTCAAGTGCTAGTGTGGAATTAAGTGGAAGTAGCAAGGTCCGCTTCCCTCTATGTGTTGCTTAGGTTTAGAAGGTAAGTCATCATAAACGACATTTAACCCCTCTAGAATCATAATCAATTCGTGGTATTCTTGGTCGTGTGCTTACAGCACAAAACAAAGGAAACAAGCTGCTTCATGCAATAGAAAAGTTGAAAAAAGCTTGACCTATTATATGAGCACACTCTGTTAACACATCGTAACTGACCAACAACGGGGTTCAGTGGGCTAGTTAGTAGGTGTTAGAGTATGTGCAGGAGCCATTAAATAATAAGGACGTGAACGTATGAGAAAATACATAATTGAATCAGGCGACACTATTTCTGCTATTGCAAAAGCCAATGGTATTTCACAGAAAAAATTATTAGCGGCCAACCAATCCATCAGCGACGCCAATGCTATTAAAGTGGGGGATCAATTAACGATTCCAGAAAAGATTGAAGACCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCGCCGAGCACGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.40,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 6675-6822 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMLJ01000030.1 Marinomonas arctica strain CGMCC 1.6498 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6675 28 96.4 32 ........................A... ACCATCCGCGATTAACTTCATCGTTTCTTTGC 6735 28 100.0 32 ............................ TGCATGCATCTTGCCCTCTGTCGTATTGGGGT 6795 28 85.7 0 .......................AG.TT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTGTCCTGCCGCATAGGCAGCTGGTAAA # Left flank : CAGCCGTATTATCAAGTGATGACAGAGAATGGACTTTTTGAAATAAGCGATCCTACTATTCTTGAACAATCAAACACATGTATTAAATACGTTCGAAATCAATCAATAGACAAACTAACACCAGCAGCTAAGGCTAGAAGGCTTCGTAGAGCAAAGAAAAGGGCACTTGCAAGAGGCGAAGAATTCAATCCTGTTGACGCTCAACTAAAGGAAGTTGATTTTTACCATTCAATACCAATGGATAGCTCACAATCTGGTAGGGCTTATATGCTGAAAATTCAAAGGTATGAAATTGATTTTCCGAAAAAAGAAGATATCTTTAATACATGCTCTTATGGATTATCAACGAACTCGCGGTATCAAGCGCTTTTACCAATCTAATTTGGTAGAAATAAAACGCATAAAAATCAAATGTTTATAAACAACCTGAGAAATTAGGTGTTTTGTATAAAGTTGGTCTATATTATTGTAAATTAAGACTATTTTTAAACTTTGCTGTA # Right flank : TAGGACTGGAAGTAAGATTCCGCAACGATGAACATAAACCTACCGAAAAGGTAGATAAAGCCCACGGATGGGCAATTTCTATTGTTTATAATTTATGTAAGAAACATTGTTAAATGATAAGGAATAGCAGTAAGTGAAATTATACATCATTATTTGATAATGGGTTTTAATAGAATGAAGCATCGATAGGGTATTCATATAATATGAGATATTAATCCCAATATTGCTTAAAATTAAGTTGCCCCTCCCTAATATGTAGTATGCACTGACGTTTATTTAAAAAATGCTAATCTTGATCGTAAGTTGATAGACCAGGTGCAATGCCGCGACTCTCAACATCATACAAAGTCTGATGATTACGCAACCATAGCTGGTAATTATACCCCTTTAAGCTATGATCTTCCGTGCAGTCTACATTCCAGTAATGTAGCCAATAGCCCACTACCGCAGCTCTTACCATGAGTTTGAGTGCGCCATCCTTCATATCGAAATCATATTCT # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCTGCCGCATAGGCAGCTGGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 221405-217115 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMLJ01000007.1 Marinomonas arctica strain CGMCC 1.6498 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221404 29 96.6 31 ............................T GTGAATCTTTCTTAGCTGCAAGTTAGCCTTC 221344 29 96.6 31 ............................T GTTGCAAAGTGAGTGGTGACAGCATGGAACC 221284 29 96.6 31 ............................T CCAAAAATATGTTTAACGGAATCCGTCAAGA 221224 29 96.6 31 ............................T ATAATTCTCGCCAATTCTTCATCGCTAAGGT 221164 29 96.6 31 ............................T AATCAGCAGTTCTACCAGTCTAATGCGTTGC 221104 29 100.0 31 ............................. AGGCCAAAGCAAAACTGTCTTACCTGACCGT 221044 29 100.0 31 ............................. GGACGGGCAACATTTACAGTAGAAAGCGCGG 220984 29 100.0 31 ............................. ACGTGAATTTTACCAAAAATGTTCAATTCTT 220924 29 100.0 31 ............................. AACGAGACATTGCGGAGTTGGTGAACTATGC 220864 29 96.6 31 ............................G CATTGGACGTGTTAGAAGGCCCTATTGAAAT 220804 29 96.6 31 ............................G ATAAAATCTAGTTCGTCCCACTTCTGGTTTT 220744 29 100.0 31 ............................. AGGTAAAAAACTGTTCCTTTTCAGTCATCTT 220684 29 100.0 31 ............................. CGGCCGCGCTCACAGCGCAGATCGTAAGCGC 220624 29 100.0 31 ............................. TGCAAGGCATAAACGCCCGATATATTCATAA 220564 29 100.0 31 ............................. CAAACCCCAAATCCATCAGCTTAAACAGCGA 220504 29 100.0 31 ............................. CGCTTTGATCGTGTGAATAGAGCATCTTAGA 220444 29 96.6 31 ............................T GCGGGGGTGTGTGATGGCTGACCACGTCGCT 220384 29 96.6 31 ............................C AACGCGTTGCAAGATATGGAAGCGGTGCAAA 220324 29 100.0 31 ............................. TCAATCAAGACCGCGCCACGTTCAATCATTC 220264 29 96.6 31 ............................G CTATGCCGGCAACCGAACCCCACAGCACACT 220204 29 96.6 31 ............................T TACGGGCGGCTCTGGTATTGTCATGATCACT 220144 29 96.6 31 ............................T GAGTTTTGGCAAGATGAAGATCTTGCGGAAA 220084 29 96.6 31 ............................C AACACGGTTTCAAGTCAAGTGAATGAAGTTT 220024 29 96.6 31 ............................T GCATCTTAAGTTCCTCTGTTCGTTACCTACT 219964 29 96.6 31 ............................T TTTAGAGCTAGCGCCTGATCTAGTGAAACAA 219904 29 96.6 31 ............................G ACAAACACAGCAACTTCCCAACTTAATGCCC 219844 29 96.6 31 ............................C GTTAAGCACCCATACAGCGCCAGCTAAGCCA 219784 29 96.6 31 ............................G ATAATGTCTTTCTTTTCCACATCTTCAATAG 219724 29 96.6 31 ............................G CAGATAGCTAGCATTAACTAGACTGTCTAGG 219664 29 100.0 31 ............................. CTTCTTCAAGTGCTGTTTGTGCATCGGTTGC 219604 29 100.0 31 ............................. TCTGATACGTTTGAATGCGCGGCAGTCCACC 219544 29 100.0 31 ............................. GACGCATACGGGACATTTCGCGGTTTTGTCA 219484 29 100.0 31 ............................. AAACCCTGTTTGATTACTGCGTTGTTTGATT 219424 29 96.6 31 ............................G TGGCCGTGGTAACCTTCGCTTGAAATCATGC 219364 29 100.0 31 ............................. AATGAAAAAAACGCGGTCCCACTTAGTGAAA 219304 29 96.6 31 ............................C GCTGGCGCGGGCGGTATTACGTCGTCCTCTT 219244 29 100.0 31 ............................. CGATAGCGCGATCTATTGAGCGTGGTGCTTA 219184 29 96.6 32 ............................G CGCATACGTTTAGCGAACAATCCGAATATTCT 219123 29 96.6 31 ............................G CCTATTTGTAAAAAGTAACGATGTTTTTAAA 219063 29 96.6 31 ............................T GGTCCTTAGTAGCTCGACGCTCTATCGTTGC 219003 29 96.6 31 ............................T CCAGGCTATACACCTGTTGATTATTCGCCAG 218943 29 100.0 31 ............................. CGCGACCACACGCACATGGGATTTCGCCTAT 218883 29 100.0 31 ............................. TTGCGCCGGATGGCGGTATCTACATTTTCAA 218823 29 96.6 31 ............................G CCTGTTTACTGGGGTTTTCTTGTTTTTTTAG 218763 29 96.6 31 ............................T TTATAACCTCAACCAAGTCACGCTCTTTTAT 218703 29 100.0 31 ............................. TTCCAGCCGATACGGCCACCGCGAGACATAA 218643 29 100.0 31 ............................. TAGAGCTAACATCTTTTAATACGCGGTGCAT 218583 29 100.0 31 ............................. CGTCTACATAGAACAACAAAAAACAGGGGCT 218523 29 96.6 31 ............................G CGCACGCCTTGGCCGTGGTTATTGACCTCCA 218463 29 100.0 31 ............................. ATGTTGGTAAAGTCAAATGCGCTGTGAAATC 218403 29 100.0 31 ............................. CAGCAACAGCACACCGCAATCCGTAACCGTA 218343 29 96.6 31 ............................C GACTTATTAAAACGGATTTTGAGTTTTTCGC 218283 29 100.0 31 ............................. GTGAACTGTTCAGCTTGAATCTTAGCAAAAT 218223 29 96.6 31 ............................G TTATGACTAATGATAAGATTGTTGAAGTTGT 218163 29 96.6 31 ............................G CCAAAGCCCACTACATCAGACGCTTTATCTA 218103 29 96.6 31 ............................T AAACAGAAGGCAGACGCATGACGAACGGCAA 218043 29 100.0 31 ............................. CCCACACGAAACGGCTTGACAACTTTATACT 217983 29 96.6 31 ............................G TTAAAAAAACCATATCGATTATAAACAACCG 217923 29 96.6 31 ............................G TTAAAAAAACCATATCGATTATAAACAACCG 217863 29 96.6 31 ............................G TGATCGGCGGCGTTGCCCTGTACTTTATGAC 217803 29 96.6 31 ............................T GTGTTAATAATAAGTGAAGTATCAGTTGTCA 217743 29 96.6 31 ............................G TGATCGGCGGCGTTGCCCTGTACTTTATGAC 217683 29 96.6 31 ............................T GTGTTAATAATAAGTGAAGTATCAGTTGTCA 217623 29 100.0 31 ............................. TGCAAGAACGAACCTTTTAGCTTTAACTTTT 217563 29 96.6 31 ............................T CTACGTTAAAAGCAGAGCACACACAGTTATC 217503 29 100.0 31 ............................. TGTCTGTGTTGAATAGAATAGGGCGCTCTTT 217443 29 100.0 31 ............................. TGCAAGAACGAACCTTTTAGCTTTAACTTTT 217383 29 100.0 31 ............................. TGCAAGAACGAACCTTTTAGCTTTAACTTTT 217323 29 100.0 31 ............................. TCAAACACAGCAAAGCTGTGGCTAGCAGTAG 217263 29 96.6 31 ............................G TACAGCCCTTGGCGAATATCACCGCCGTTTA 217203 29 100.0 31 ............................. ACTAGGTAGTTGGCGCTTGATCTTCGATTTG 217143 29 75.9 0 .....T......G.....T......GTTT | ========== ====== ====== ====== ============================= ================================ ================== 72 29 97.8 31 GTTCACCGCCGAATACGCGGCTTAGAAAA # Left flank : TGTTAGACGTTTACATGTGACCAGTCTACCGATACCTCATGCTGGAGGTGTTTATGCAGCAAAGCCTCCAATAGAAATTATTGGTGGGTTGCTAGCGCTTGAAAATGAACAAAAAATGTCTGAAACGTTAAATCGTAATTTAGAACAGCAAAAAGAGGATAAAGGTCTCTTAAATATTGGCTGTGCTGCCGATGACTGCTTTTTCTTTTATGAGAAAAACCGTCATGAAATGACGGTAAAGCAACACTCTAAAGCCACGACTGCTTTTTTATTTGAGTTACTGTCACAGCTACAAAGTTGTGGAACCGTGCCTATGATCGATATACATGCTTATGGTCAATGGCTTAAATAGATAAGATACAAAAAATACCCTTTTTTTTAGAATAATCGTCAAACCCAGTAAAATAGGGGCTTGGCGACTCTCGATAAAAACAATGGTATTTTTGTCAAAAAGGTCAAAAGCTCTTTAACAATCAAATACTTAATGGTATTTTTTTATA # Right flank : ATGGGTTCCCACCTTCAAGGCTGTCATTAAACGCCTTCCGTCAGTCTTGTAGGTCGCGATTTATCCTGAAAAAAAAATAGCATGCCGACAAAAAACTCGCCACGACAAATTACGTCTTGTCGGGCTAAAGCCACGACCTACAAAAAAACAATATAAATCAACCAATTGTTGGCTAAATAATGTTACATGCCTGATCACGGTCGTACCTCCCTCATCATGCCTACAAAATATGCTCGCTACCTTTAACGACAGCCGTATTCAAGGCTGTCGTTAAACGACTTCCGTCAGTCTTGTAGGTCGCGATTTATCCTGAAAAAATAGCATGCCGACAAAAAACTCGCCACGACAAATTACGTCTTGTCGGGCTAAAGCCACGACCTACAAAAAACAATATAAATCAACCAATTGTAGGCTAAATAATCTTACATACCTGATCACGGTCGTGCCCCTTATGCAGCCTTAGGGTTTATTACCTATGGGTATCAACATACTCTTTTAGT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAATACGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.60,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //