Array 1 774588-774280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045532.1 Bifidobacterium breve strain IDCC4401 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 774587 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 774518 33 100.0 36 ................................. GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 774449 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 774381 33 97.0 36 ............T.................... CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 774312 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 95.8 36 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CCCTGGGCATGCTCGCCATCGAGCAAGGCAGGAGCGTGAGGTTCCGGCAGACCGCGGAGCTCGTGCCCCAGCCCGGCAAGGCCAAACGCGACGGCGCCCTCGACAGCCTGCTCAGGGACCTCGCCCGTGCCGACCTGATCATCCTCGACGAGTTCGGCTACGTGCCCTTCGACATCGACGGGGCCCGTCTCCTCTACCAGATCATCGCCGGCAGCTACGAACGTCGCAGCATCATCTTCACCACGAACATCGAGTTCAGCAAATGGGGGACGATCTTCGCCGACGACAAACTCGCCGCCGCGATCATCGACCGCATCGTCCACCACGGACGCCTCATCGAATTCACCGGCCCCAGCCGACGCGTCAGCCAAGCCCTCATGTTCGGCAAGACGGACAACCAGTAAAACAAACCACCGGCCGGCACTCCTCATGCCGAAAACCGAAAAAAATTAGTGACGAAACACGAAACACCGACTTGACTAAAAACATCCGAAACCCGA # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGTAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 782508-779641 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045532.1 Bifidobacterium breve strain IDCC4401 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 782507 33 100.0 35 ................................. CGCATGGTCGTGCTCGACCCACCGCACCTGCGCAA 782439 33 100.0 33 ................................. CGAAGAAGCACATGAGGATGGTGAACGCGGTCA 782373 33 100.0 33 ................................. CGGCAACAAGTCGGCGTGGAGCGCGGGTGCCAG 782307 33 100.0 36 ................................. ACGATCCGCTCGATCGCGACGCGGAACGGGACGCAC 782238 33 100.0 35 ................................. ATGCCAAACGCAACTAATAGTGCGCGCATGGACAT 782170 33 100.0 34 ................................. CTAGGAAACCGGCGAATGAGAGATAACCCGTGTT 782103 33 100.0 33 ................................. TCGGACAGGCCCAATGTGGCGGATCGGGAGTCC 782037 33 100.0 36 ................................. TGCCTGCAGATGCGGCGGAGCACAGTGAATTCCAGG 781968 33 100.0 35 ................................. CTTCCATATATGAAAAAAGTCGTATCGGCGTGATA 781900 33 100.0 34 ................................. GACTATGTGCGAGACGATGAATACGCCGAGCAAA 781833 33 100.0 34 ................................. CAACAGTCCGAGGTCACGGGCTCGGATAAGCTGG 781766 33 100.0 30 ................................. CGGTTACCGCAACCGCCCTGTATACGAATC 781703 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 781635 33 100.0 34 ................................. ATATCCTACAGCGTCCACCCCTCTCATCGCATTC 781568 33 100.0 35 ................................. GATGTATGGGGTATTGCAATCTGCCCGCGCTCAAA 781500 33 100.0 35 ................................. CTGACTGCCGATCTCGAACAGGTCTGTGACGGTCG 781432 33 100.0 35 ................................. TACGATCCGCATGACACGGCGCATCTCCTGGTCAC 781364 33 100.0 34 ................................. CGAGAGCGCACGTAAATCGCTCGGTTCGCCGTAA 781297 33 100.0 35 ................................. CGCCTGATTACGTGACATTGCAATCCAATATGCTG 781229 33 100.0 35 ................................. CTTTGTATGCAATCGTATCAACGCCCGTCGCGACC 781161 33 100.0 35 ................................. GCGTAGTCTAGGCCCCACGCGCCGGTCGAGGCGGT 781093 33 100.0 35 ................................. AAGGGCCTCGGCTACGGCACGTACACGGTCACCGA 781025 33 100.0 34 ................................. AACAACAAGGCCACGCATGAGGAACACAGCGCCG 780958 33 100.0 35 ................................. TTCGCGGCGCTGCCTGCGGGGATGTGCTCGAACGC 780890 33 100.0 35 ................................. ATCAGGCGTGAACCCCGCCAAACACGTTCGAATAA 780822 33 100.0 35 ................................. TATGACACGGTTATATTGAGCACACCGCGACAGTG 780754 33 100.0 33 ................................. ATCACCAGACGATAAAGACCAGGCTCACTAATG 780688 33 100.0 34 ................................. AGGGACTTGACGTAGAAGTCGCCGAGGGTCTGCG 780621 33 100.0 35 ................................. CTCGCCCGGCGGAATCCCGTATCGAAGTAAAGCGA 780553 33 100.0 34 ................................. GAGCTTTCTGATGGCGCTCGGATCCCAAGTCACG 780486 33 100.0 35 ................................. CTGTGTGGTCATGCCGCAGGCTTTGGCTATGCGTT 780418 33 100.0 35 ................................. CAGAACATCGAAACGTACTGTCCAGACTGGATGAC 780350 33 100.0 33 ................................. ACTGTCTGGGGGTATGGGGGCTAGGAGTTTGTC 780284 33 100.0 36 ................................. TCTCCACGAAATACGACGGCGGCGCACATGTGCCAT 780215 33 100.0 34 ................................. AATCCGACGACGCCAGCGGACACGCCGCCACGCC 780148 33 100.0 34 ................................. AGCACGTTTGCTTTCATAGCATCGGTGAAACCCG 780081 33 100.0 35 ................................. GTGTCCACCATGCGCAAGGCGGGCGCGGACATGAA 780013 33 100.0 36 ................................. ATCGCAGGCAAGGGAGCGCAGGACGGCGCGAACTGG 779944 33 100.0 36 ................................. TCCACTTGGATTGCATCAGCCGTGACACCGACCCGG 779875 33 100.0 33 ................................. ACCGTGCCCGACACGGCCGGCACGCTGGAATAC 779809 33 100.0 34 ................................. AGCGTGGAGTGGGAGCGGGCCGGGACGGAGCAGG 779742 33 100.0 36 ................................. CTCCGGGGATTGAAAAGCGCATGGGACGGCGTGACC 779673 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 43 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAATGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGGTGTCCATTTTCGCG # Right flank : CATTGTGAGTGTAATCGGCAGTGTTGGTTTTTGTTTTTGTTCAATAGGATTTTGAGGTTTTAGTCACGAAGGTTTTTCGGGTTTAGGCGGAAAGGCATGCCGACCACCCGTGGGCCTTAGCCTGATGGTGCTTCTAGTTCCATTCGGGAAAGGTCCGGAAAGGCAATGATCAGCATGCCCCAGATACAGTCTATCCGTTCGCGTCGCAGGAACGGTGAGTCCATCGCCTCGATAGCGCGCAGCGAGAGGGTCAGCGAGCCGACCGTGCGCAAGTATCTGAGGGTCGACGACCTATCGGCCGGGCCGCCCGTGAGGCGACGTCGTGGTTCGGTGATCGACGAGTGGCTGCCCATGATCGAGGGCATGCTCGCCGAGGACCGGGAGACCTGGCGCAAGCAGCGGCATACCGCGACCCGCATCCATGAGCGGTTGCGCGACGGGTACGGGGCCGGGGTGTCGTTGTCGACGGTGACCCGGACCGTGGCGCGGCTCAGGCGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //