Array 1 232701-233827 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLJ01000007.1 Escherichia coli strain GZC09-14 NODE_7_length_250823_cov_46.4455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232701 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 232762 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 232823 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 232884 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 232945 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 233006 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 233067 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 233128 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 233189 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 233250 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 233311 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 233372 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 233433 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 233494 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 233555 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 233616 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 233677 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 233738 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 233799 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8963-10395 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLJ01000014.1 Escherichia coli strain GZC09-14 NODE_14_length_135103_cov_43.2075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8963 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 9024 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 9085 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 9146 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 9207 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 9268 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 9329 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 9390 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 9451 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 9512 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 9573 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 9634 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 9695 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 9756 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 9818 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 9879 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 9940 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 10001 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 10062 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 10123 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 10184 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 10245 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 10306 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 10367 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //