Array 1 1-318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRT010000011.1 Pectobacterium versatile strain CFBP5669 Pectobacterium_versatile_CFBP5669_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 19 67.9 32 ---------................... CAAAATCAAGCAACAAGGCCACTACAGTTAGC 52 28 100.0 32 ............................ ATAGGCCAGCAGTTACAACCCCTTCTCGAATC 112 28 100.0 32 ............................ ATTAGATAATTTCCTCATCAAACAGCAATTCA 172 28 100.0 32 ............................ ACTCCGGCACTTCGATCTCTGTCGTGCGAAAC 232 28 92.9 32 ...........C.C.............. GCAATTGCTGAAATCGATGCACAAGCGGCTGT 292 27 85.7 0 .............C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 6 28 91.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : | # Right flank : GCTTATCGGGATGCGTCGCTGGCGCGACACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCCAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCAGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTCAGCGCTGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCCCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8796-9062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRT010000035.1 Pectobacterium versatile strain CFBP5669 Pectobacterium_versatile_CFBP5669_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8796 28 100.0 32 ............................ ACCAAAAGAAATAGATCACATTAATGGCAACA 8856 28 100.0 32 ............................ CAGCAGCCCAGCCAGTGCCGCCTGCTGAGCAA 8916 28 100.0 32 ............................ TAAGCGGGTTAGTACGCCGGTTCGCCGACCAA 8976 28 100.0 31 ............................ GAGTAAAGGGCAGGGAACCCATTAATCACCT 9035 28 92.9 0 .......A.........T.......... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCGACGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGCCAGATGTTTTTCGTGTTTGTGAAACATGGCCCGCTACAGGACATCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTAGTTAGTGTAAAAATTTAACGGTTCACTGCCGTATAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGCAGCTTAGAAACGCTACGTATCTGACGAAACCGTAGCAAACAC # Right flank : TAAAAATAAAACGTTGTCGAAAAGATGCGGAAGTTCACTGCCGTATAGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6881-6744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRT010000039.1 Pectobacterium versatile strain CFBP5669 Pectobacterium_versatile_CFBP5669_contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6880 17 57.1 32 -----------..T.............. ACATCAGATCAACCGGCTCGATACCACGCCAT 6831 28 92.9 32 ...C.......C................ AGTCCGATCTTCATCACAGCTGACGCCTCTTG 6771 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 83.3 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : AGAAGCTATCGCGGCGCGAAACGAAGCGCTTTGTTCACTGCCGTATAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAGGCAGCTTAGAAAAATTGCTATTAGCTGGCGGATTGCTGGCATCAGGTTCACTGCCGCACAGGCAGTTTATCCACGGCCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCT # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTCCCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53495-54560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRT010000022.1 Pectobacterium versatile strain CFBP5669 Pectobacterium_versatile_CFBP5669_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53495 29 100.0 32 ............................. CGTGGCCGTCACGGGGATCGGGGCACTTCTGA 53556 29 100.0 32 ............................. GTTGTTATGATTGATAGCTGGGAGAGTTGATA 53617 29 100.0 32 ............................. CCCGCGAGGGTGATTATCTGGTCGGCACCGAT 53678 29 100.0 32 ............................. AACTTAACCGAGGTAATGATTCACTGCTGACA 53739 29 100.0 32 ............................. CTGTTTGATGACCGCAGACCCACCGCCAAACG 53800 29 100.0 32 ............................. CTAACGGACGACCTGAAAGACTCTTTTTCTCT 53861 29 100.0 32 ............................. TACGAGGTAATTCGTCCGTGGCACGGCGTAAA 53922 29 100.0 32 ............................. TGCTCGCAACGTTTGCGTATGCTGATTATTGC 53983 29 100.0 32 ............................. CGAGCATTGCGCGCACTCTCGTCAGCGCCGAT 54044 29 100.0 32 ............................. TATTCAGGATGACGAGCAGCTTTACGACCGAA 54105 29 100.0 32 ............................. AAAATTCAGATATTTGTCGGGATGTCGCCAGG 54166 29 100.0 32 ............................. CCACATTAATTTAGCCTGATTGAAATCGCGCG 54227 29 100.0 32 ............................. CAAAAACTGTCATGCGATGAGGTCTGGCAATG 54288 29 100.0 32 ............................. GGAAAGAACCTTCCGATAATGGCGGCTATGGT 54349 29 100.0 32 ............................. GATTTTCAGTATCGATAGCCGACTGAACCGTA 54410 29 100.0 32 ............................. CTTCCTGAATGAATTTCACACCCTGTACTTGC 54471 29 100.0 32 ............................. TAGAACACTTGGATTGATTGGCGGCCCAGTCG 54532 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGTGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTGGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCAGGTGTGTATGTCGGCGATACCTCACAGCGAGTGAGGGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTGATGGCGTGGGCAACGAATACGGAGTCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GTCTTTTTCGCAAACTGGCTGAATACCCAGTGAGTGTTCCCCGCGCCAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCGGGGATAAACCGCGCTTTGCTTATATCATCTTGGCTGACAACATGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGAGTTCTGGGTGTTTTTTAATCCAGTTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTGCATATCGCATCGTCATTTTGATGTCAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCGCGACTACGCCGCGAAACTCATCAGAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGATTCAGATTATTTCCAAGTATCCAGTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTGAAAGTATCGGTCAACGCATACGCAGACGGTGTTCCCCGCGCCAGCGGGGATAAACCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 54725-56096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRT010000022.1 Pectobacterium versatile strain CFBP5669 Pectobacterium_versatile_CFBP5669_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54725 29 100.0 32 ............................. CTGAGTTCTGGGTGTTTTTTAATCCAGTTAAC 54786 29 100.0 32 ............................. TGTGCATATCGCATCGTCATTTTGATGTCAGT 54847 29 100.0 32 ............................. CCCGCGACTACGCCGCGAAACTCATCAGAGAC 54908 29 100.0 32 ............................. TGATTCAGATTATTTCCAAGTATCCAGTTGAA 54969 29 100.0 32 ............................. AGTGAAAGTATCGGTCAACGCATACGCAGACG 55030 29 100.0 32 ............................. AGCATCGGCATGGAAACGAGAGCCAATACGCC 55091 29 100.0 32 ............................. GTATGTATCCATTACTTCAATATGTCTCAGCA 55152 29 100.0 32 ............................. TCCAGCAGAGGTGGAGATTCGTTGGAGAAATG 55213 29 100.0 32 ............................. AAGCCGTGTTGGACGCGAAAGGCCAGAGGTTC 55274 29 100.0 32 ............................. CCCGGCGCAGTTCATCAATAGCGCAAACAATC 55335 29 100.0 32 ............................. GCATGGTGCATCGCTAATTGACGCTTTAGGCC 55396 29 100.0 32 ............................. TCCGACTTCTTCAGGTAGATAAACCTGCGTCC 55457 29 100.0 32 ............................. CAGCGACGAATCTAACAGCGACCCGCCACCAG 55518 29 100.0 32 ............................. CACGGATTGATGGACGAGACAAAAAAACAATT 55579 29 100.0 33 ............................. GTGCAATGAATGCTATTGAGTGCGCAGAAAAAG 55641 29 100.0 32 ............................. GTATTTACGACGCTTTGCATTGTCTTTAGCTG 55702 29 100.0 32 ............................. TCTTGCAAATTTGTTCATGGCATAAACCTATA 55763 29 100.0 32 ............................. CTGCTGGTCAGTGAGGAACGGATCACGTTTCG 55824 29 100.0 32 ............................. CCAATCATCAACAACGTCCAGCGCTGGGCGTA 55885 29 100.0 32 ............................. TGATACCAGAGATCGATAACTTCACTGAGACG 55946 29 100.0 32 ............................. CGCTATCGGCAGATATCGCGCTGGGTGCCGGA 56007 29 100.0 32 ............................. CGAACGGCGCACCCGTGATGGTGGCATATAGC 56068 29 75.9 0 ..................CT..GGG.T.C | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAACTGTCATGCGATGAGGTCTGGCAATGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAAAGAACCTTCCGATAATGGCGGCTATGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTTTCAGTATCGATAGCCGACTGAACCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTCCTGAATGAATTTCACACCCTGTACTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTAGAACACTTGGATTGATTGGCGGCCCAGTCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTTTTTCGCAAACTGGCTGAATACCCAGTGAGTGTTCCCCGCGCCAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCGGGGATAAACCGCGCTTTGCTTATATCATCTTGGCTGACAACAT # Right flank : CCACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-1383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRT010000015.1 Pectobacterium versatile strain CFBP5669 Pectobacterium_versatile_CFBP5669_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.6 33 .G........................... GTAATATCTTCGGGCGGCGGCGAGGTTGCGGGA A,T,AG [10,15,17] 73 29 100.0 32 ............................. CGCAACTGCGCGGAGGTGGGGTGTGAGTGAGC 134 29 100.0 32 ............................. CACAGACTCAGATTAATTTCGGTGAATTTATC 195 29 100.0 32 ............................. AATGTGAAATCAATACATACAAACCTGCATCA 256 29 100.0 32 ............................. CTCTCGGTGTTCTCTGGTTTCTATTGCGCCGT 317 29 96.6 32 ...........A................. GGATGCTGAGCGCTAATCGTTTTCTGATTAAC 378 29 82.8 32 ........T...GT...A...G....... ACTTCAACGACTGCGCCGGCGAGCTCAATATG 439 29 93.1 33 ...........AT................ GGGAAAAAAGGCGGGGCTGGCGTTACAGTTGCA 501 29 100.0 32 ............................. GTTTCGTCAGCATCAACGGTCGCTGGAATTTG 562 29 96.6 32 .A........................... CGGTAGAAATGCACGCGTAACCCATCATTTAG 623 29 96.6 32 .A........................... TTCAACTTAATTATTTAAGTTAACAGGGATGA 684 29 100.0 32 ............................. CCGGTGATGACCTGGCGAAATCACAGCAGCAG 745 29 100.0 32 ............................. CTGCCGATGATGCGGCGGAGAGTTTTTTATCT 806 29 100.0 32 ............................. TACGATTACAAGCGCTGGGCGCTGAGTATCAC 867 29 100.0 32 ............................. CTGCCCCCGACATTCTGACGGCAATTAAACCC 928 29 100.0 32 ............................. GGCAGTCTGGCATTCTTCTCTGGTTCATTGAA 989 29 96.6 32 .............T............... TCAGGTGGCAGCAATACCGGGACTACCGACAG 1050 29 96.6 32 .............T............... CGACAGGCGAATTTCATTGCGCAAATCGGCAC 1111 29 96.6 32 .............T............... GGATAAGTGCGCTGATTGATGCCATCAGGGGC 1172 29 96.6 32 .............T............... GTGTTATAGGTGCCGAGCTGTTCGTCATTCAG 1233 29 96.6 32 .............T............... AAACTATTTCCGGCATGGTGGCTACAAGGGCA 1294 29 100.0 32 ............................. GTTCTGTTCACTGGCTCAAGCCCTGCGAACGG 1355 29 82.8 0 AC..........AT.............T. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTACTGG # Right flank : GGGCTTATACCCCTTATTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGTTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //