Array 1 10901-12276 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXA01000025.1 Lentilactobacillus parakefiri strain KR NODE_25_length_40095_cov_71.1436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 10901 29 100.0 32 ............................. TGGGGCGGCAATTCGGAATCGGTATAATCGCC 10962 29 100.0 32 ............................. ACCTCAAGCGCTTAGCCAATTCGGTATCATCG 11023 29 100.0 32 ............................. CCAGTTCAATTATACGCCATCGATGATTTATT 11084 29 96.6 32 ............................C AACTATTCCAAGGGTGCATTTTCAAATCAGTT 11145 29 100.0 32 ............................. TATAACGCTGCATGGTGCTCCACGCAATCCTT 11206 29 100.0 34 ............................. GGATGGGAGAACTGTAACGGTTACCGATTGGTGG 11269 29 96.6 32 ............................C CATAGTGTCGTGCCACTGATCGGGGTTTAGTT 11330 29 96.6 32 ............................C AACTAGCATTGCACTTCCAAGTGATTCATACG 11391 29 100.0 32 ............................. GGATATGAAGTAGTCAATCTAGGCTCTGAGAA 11452 29 100.0 33 ............................. ATATAGTCGAAAGCAACACCGGTTATTTTATGG 11514 29 100.0 32 ............................. AATACACTAGACACAGCCCTAATTAAGGCAGC 11575 29 96.6 33 ............................C CGGGCGCTGCTGATACTCAGCACTGAAAACTCG 11637 29 100.0 32 ............................. ACGCACTTCATGAACCCGGCGAATCCGGTGCC 11698 29 96.6 32 ............................C AGTCATCATCGAAGAAAGATTTGAATTGCCAA 11759 29 100.0 33 ............................. ATATTCAAGACTGTTTCACCGTTAATGGCGTTG 11821 29 100.0 32 ............................. ATGATTACACAGTATCTGTCGATGGCACGATC 11882 29 100.0 32 ............................. CTCCTTGCTTAGCTTGAATGACAACCGGTTTG 11943 29 100.0 33 ............................. ATATTCAAGACTGTTTCACCGTTAATGGCGTTG 12005 29 100.0 32 ............................. ATGATTACACAGTATCTGTCGATGGCACGATC 12066 29 100.0 32 ............................. CTCCTTGCTTAGCTTGAATGACAACCGGTTTG 12127 29 100.0 33 ............................. ATATTCAAGACTGTTTCACCGTTAATGGTGTTG 12189 29 100.0 32 ............................. TATTAAACCCGTGCAAAGTCTTGTGATAACGC 12250 27 86.2 0 ............T.....A..--...... | ========== ====== ====== ====== ============================= ================================== ================== 23 29 98.7 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GCAACTGATAAAATTATTTCTATTGGCGCAGTCAAAAAAGTTGAAAATGGTGAAATTGATCAATTTTATAAACTTATTCAGGTTAACGATAACATTCAAACGAAAATAACGACCTTAACAGGGATTTCTTCTGACTTGCTAAGGACAAGGGGAATTGATTTGGATTTAGCATTGCAACAATTAAAAAAGTTTATTGGCCAATCAGTCGTTGTGGGGTATAATTTGCGATTTGATCAAGAATTTCTGTCCTATGGTTTCAAGAAAATTGGTCAACCAGATCTATCCAACCAAATGGTAGATCTAATGCCAGTTGTAAAAAAAACAAATAAATTTCTTGATAATTATCGTTTAAGTACGGTACTTAAAGAATACTCAGTCAGAAATTCAAAACCACATCATGCATTATCTGATGCTCAAGCAACCCTTGAATTGGAGACCAAACTCATAGAAAATGGACATTTACTAATTTAGAAATGCTGTTATGGCGGGAATCGTTTAGT # Right flank : TTTACCTAAAGCCAATTCAAGGCTTTTGACTACTGGATTATGAATTAAGCAACGGGGTTATCATTTAAAGATGGTGGTGCCGTAATAGATCAAAATAGAATTCGTCATAAGTGATGGGGCTAATTTAACCAGAAAGAGGTTGTTTGTAGTTATGATGGAATGTTTTTCTCCAGAAACGATTGATCACTTGAAATATTATGTTTATACATATGCTGATCCAACAAATCATGAAATCTTTTATATAGGGAAAGGGACCGGTAATCGAATCTTTGCCCACGAAAAAGACGCTGCCCAGGATCGTTATGAAAGTAATAAAATTGAACGCATTAACCAATTAACTCAACACGGCCAGCAACCAGAGCTACACATTATTCGTTATGGACTTAGCGAAACCGAAGCCTTTGTTTTAGAAGCGGGGTTAATCCGGACATTTCTCTATTGTCATCCACATAGCTATTTTAATTCAGATATTGATTTGACTAATAAAGTAGCGGGCCATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37441-37591 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXA01000009.1 Lentilactobacillus parakefiri strain KR NODE_9_length_63692_cov_35.6035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37441 29 100.0 32 ............................. AAGAAAACGATTGTTAAGCAAAACAGTGCTGG 37502 29 100.0 32 ............................. GCAACAGGTAATTTAGTTTATGTATACAGATA 37563 29 93.1 0 ...........A................A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTATTCCCCACGTGTGTAGGGGTGATCCT # Left flank : TTGGCAACGTTTGCCTGATTGGTGACATCGACAGGAATGAACACTGCCTTTTGACCGGCCGAAGCAACTTCGGTAATAACTGCCTGGGCCTTTTCTTTTTGTTGTGGTAAATCACCAATCGCGATGTCATAACCTTTTTTTGATAAATGACGTGCGATCTCAGCACCGATCCCTTGGGCACCATCGGTAATCATTGCTACTTTTGTCATGTTAGAATCCTCCTAAAGAAAAAATGTAATGCGCTTACATGTGAAATTTTACACTTATTTATTCAAAGTGCCAATGAACTTTTTTGGGCCTTATAAGAGGATTTTCTATACATGTTGGTAATGTTAAGTAAACAGTTGAAATTCAGATGAATGTAGATTTGATTTTGTCTTTGTACATTATCCATCATGATATAATTTAAGTGATCAATGAAGTTTGTGTTCAAATTTGAAAGTCATTGAAAATGAGTGATTTGTTATTTTTAAATGGCTTAATGGCGACATTTCATTAGT # Right flank : AAAGGTGGACGGTATGACGGACGCGCAGGCATTGTGTTCCTAAACCCCACAAGTATCTTCAATTAAGGTGGTATTAACTAAATATGGCTAATAAAAGAACAAACTTAATGACGTCAAGCCAGATCGAAACTTTTCTTAATTCAGATTCCAGCAGTTTAGAACCAGCAAATACTGAAAAACCTTTGAAAAAATTACCTAAAAGTCTTAAACCTTTAAAGAAATTAAATAATCAAGTAGCGGCTCGGGAGATTGTTCAAAATTTATTAGACAACCATTATTTTTGGAGTGCTCAAAATACAATCTTGGGTCCAGTTTCAACCTACTTGAATAGCTTATCTAATAGTCAAAATAAAACGATCTTGGAACAGCTGACGCGACAAGATATCAAACTGATTAATATGTACCAAATCATTAATCAACTACAAACAAATGGTGAAAATGGGCTATTATCCGGTGACCAGTTCTTTATGCCGGTCACCCAGAAGAATCTGGGTAAATTA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //