Array 1 92710-92071 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFWD01000023.1 Escherichia coli strain KK-NP012 sequence023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92709 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 92648 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 92587 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 92526 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 92465 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 92404 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 92343 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 92282 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 92221 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 92160 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 92099 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 148-1275 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFWD01000022.1 Escherichia coli strain KK-NP012 sequence022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 148 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 209 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 270 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 331 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 392 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 453 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 514 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 575 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 636 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 697 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 758 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 819 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 881 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 942 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 1003 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 1064 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 1125 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 1186 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1247 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //