Array 1 149958-149042 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================== ================== 149957 30 100.0 38 .............................. ACCGGATACGAGCAGGAAACAACGTATAAGTGTTTTTT 149889 30 100.0 36 .............................. CATTTCGTCTCTTGGCTTTACTCCGTTTGAAGCATT 149823 30 100.0 36 .............................. ATAACAAAGATGAAGCTTTTAAATTTGCTCAAAATT 149757 30 100.0 38 .............................. GCGTTGGGTTGCACAGTAGCAACTTTAGATGGTAGTAT 149689 30 100.0 35 .............................. TCTAAAAAGACTTTAGACATTCCACATGCTGGGAA 149624 30 100.0 38 .............................. TACTATAGCTATTATAGAATTGCAATACTTTTATTATA 149556 30 86.7 79 .........A.......A...G...A.... TGTGGGTGAAATGAAGAAAGATATTATATGAAGTTATAGAAGGATAATGGGTCTTACGACCCAAACCCCTGGTAGGATT 149447 30 86.7 79 .C...C...A...............A.... TGTGGGTGAAATAGAGAAAGAGTTTGGATGGAGTTAAAGAAGGATAATGGGTCTAGCGACCCAAGCCCCAGGTAGGATT 149338 30 83.3 38 .CA......A.......A.......A.... TCAAATCATAATAATAACTATCACCATCACACTCCCCT 149270 30 90.0 36 .........G.......A.......A.... ATGCATGTCCTATATTCATTCCTGCAACAGTCTGTA 149204 30 90.0 36 .........G.......A.......A.... TATTTCTTTGAAGACGTTCCATCTGAAACTATTTGT 149138 30 93.3 37 .........G...............A.... TGTCTTTTTCTTCTATATCCAATATTCCAGCAAGTAC 149071 30 90.0 0 .........G...........G...A.... | ========== ====== ====== ====== ============================== =============================================================================== ================== 13 30 93.8 44 GTTTTTAGATTACCTATGAGGAATTGAAAC # Left flank : GATTTTTTGGTTTGTAGTAAAATAGCTGGTTTTGATTGGTTTTTCATTAATTTTGAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTGGATGGTTTTTTAGAGTACCTATGAGGAATTTAAACTGTGTATGAAATGTAGAAAGAGATTTTATGGAGTTAAAGAAGGATAGTGGGTCTGGTCTTATGATCTAAGCACCAGATAAGATTAGAATTATAATGAATTTCACGCACCAAGCTCTTGGTAAGATTAAATTTAGAATTTTTGTTGGAGAATTTTTAAATATTGGAAGATAAAAGTTAAGAGATAAATAAATATAACTTAAAATTTGTCGTCGACCCTTAGTAGTGTAAAAACACTGGGGGGTCGACGATTTTTTAGTTTGTAGTAAAATAGCGGGTTTGTATTGATTTTTGATTGATTTTGAAGAAGATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTAGATGG # Right flank : TGTGGGTGAAATGAAGAAAGAGTTTATATGAAGTTATAGAAGGATAATGGACTAGGTCCAAGCCTCTGATATGATTATAATGGGTTCAGGGATCCAAGCACCGAGTATGTTTGTGTGTAACATGTTCATATTTTTGTTGAAAACCATTACAAATTCACAAAAGAATGCTCTCTAGAATATAATGTAGTGATTATTTTGTAGGTGGGATTTGATGAAGAAGAAATTGGCTTTCTTTGTGAAAGAGGGTTTGGATAATTTTCTTGTGGATGTAATTAGTGGTGTTTCAGATGAATATGACACTAGAAAAATCATTGTTAAGAGTTATGATCAGATTAATAAGTGGATGCAGTGGGCGGATATTTCATTTTTTGAATGGTGTGATGAACTGGTAATATACGCTAGTAAATTAAAGATGGCTGAAAAAAAGAAAATTGTGTGTAGACTTCATAGGTATGAGGTTTTTACTGATTATCCTAAAATGGTTAATTGGGATAATGTAG # Questionable array : NO Score: 8.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:-0.55, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGATTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 151138-150663 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================== ================== 151137 30 100.0 36 .............................. TTTAATATCATAATGTTTCGTGCTGGTATAACTCTT 151071 30 100.0 40 .............................. TGGTGCAGGTGATAACTCAACAACTTTTAATATACCTGAT 151001 30 100.0 36 .............................. TTTATAATGGTTGGAAATGTGGTCCATGCAGCAGGT 150935 30 100.0 38 .............................. ACCACCTACCTTTTTTATTTACCTTTCATAAATAGTAT 150867 30 96.7 37 ....C......................... TTCATTTTCAACACTCCTTTTCTAATTTGTAGGTATA 150800 30 93.3 78 .................A.......G.... TGATGGTAAATGGAGAAAGAGGTTGGATGGAGTTATAGAAGGATAATGGGTCTAGTGACCCAAACCCCTGGAAGGATT 150692 30 90.0 0 .CA......A.................... | ========== ====== ====== ====== ============================== ============================================================================== ================== 7 30 97.1 44 GTTTTTAGAGTACCTATGAGGAATTAAAAC # Left flank : GTTTGGTTATTAAATATGTTTTTAGAATACCTATGAGGAATTGAAACCACTTTAATGTCTGCATATATTATATCTCCTTATTAAGTTTTTAGAATACCTATGAGGAATTGAAACTGATCTAACTTACACGATATTGTATCTTTAGTATAAGTTTTTAGAATACCTATGAGGGATTGAAACTGTGGGTGAAATGGAAAAAGGGGTTGGATTTGGTTATAGAAGGATAATGGATCTGGCGACCCAAACTCCTGGTAGGATTGCATTTAGAATACATATTATTATATTTTAATATATTAGAATTTGCTGAATTTGAAAGTTAAGAGATAAATAAATATAACTTAAAATTTGTTGTCGACCCTTAGTAGTGTAAAAACACTGGGGGGTCGACGATTTTTTAGTTTGTAGTAAAATAGCGGGTTTGGATTGATTTTTTATTGATTTTGAAGAAAATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTGGATGG # Right flank : TGTGGGTGAAATGAATAAAGATATTATATGAAGTTATAGAAGGATAATGGGTCTTACGACCCAAAACCCTGGTAGGATTGCTTTCAGAATAACGATTAGAAAATTTTAAAATGATAGAATAAATAAGTAAGAATTAAGAGATAAATAAATCTAACTTGAAATTTGTCGTCGACCCTTAGTAGTGTAAAAACATTGGAGGGTCGACGATTTTTTGGTTTGTAGTAAAATAGCTGGTTTTGATTGGTTTTTCATTAATTTTGAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTGGATGGTTTTTTAGAGTACCTATGAGGAATTTAAACTGTGTATGAAATGTAGAAAGAGATTTTATGGAGTTAAAGAAGGATAGTGGGTCTGGTCTTATGATCTAAGCACCAGATAAGATTAGAATTATAATGAATTTCACGCACCAAGCTCTTGGTAAGATTAAATTTAGAATTTTTGTTGGAGAATTT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATGAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 151820-151458 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 151819 28 92.9 40 .......G...........G........ AAAAATATGCAAAAAAGGATTCTGCTGGTGAAATTATGGG 151751 28 92.9 39 .......G...........G........ TTAGAAAAATTTCTAACATGTTTCTTTAGGTCTACAAGT 151684 28 96.4 38 .......G.................... CTTTTTGTTAGTTGCTTATGTTTGGTTATTAAATATGT 151618 28 100.0 39 ............................ CACTTTAATGTCTGCATATATTATATCTCCTTATTAAGT 151551 28 100.0 38 ............................ TGATCTAACTTACACGATATTGTATCTTTAGTATAAGT 151485 28 96.4 0 ...................G........ | ========== ====== ====== ====== ============================ ======================================== ================== 6 28 96.4 39 TTTTAGAATACCTATGAGGAATTGAAAC # Left flank : TCCCATAACATAGTCTTTAGAGTACCTATGAGGAATTAAAACGGTTATGTAGCTGTCGGAGGAGATGGTGAGGGCATTTGGTCTTTAGAGTACCTATGAGGAATTAAAACCAATCATGCGGTTGGATGGCGATAGAAGGTGTATGTAAGTCTTTAGAGTACCTATGAGGAATTAAAACTGTGGGTGAAATAGAGAAAGAGTTTGGATGGAGTTAAAGAAGGATAATGGGTCTAGCGACCCAAGCCCCAGGTAGGATTGCATTTAGAATACATATTATTATATTTTAATATATTAGAATTTGCTTAATTGGAAAGTTAAGAGATAAATAAATATAACTTAAAATTTGTCGTCGACCCTTAGTAGTGTAAAAACACCGTGGGGTCGACGATTTTTTAGTTTGTAGTAAAGTAGCGGGTTTGGATTGATTTTTTATTGATTTTGAAGAAGATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTGGATGGGG # Right flank : TGTGGGTGAAATGGAAAAAGGGGTTGGATTTGGTTATAGAAGGATAATGGATCTGGCGACCCAAACTCCTGGTAGGATTGCATTTAGAATACATATTATTATATTTTAATATATTAGAATTTGCTGAATTTGAAAGTTAAGAGATAAATAAATATAACTTAAAATTTGTTGTCGACCCTTAGTAGTGTAAAAACACTGGGGGGTCGACGATTTTTTAGTTTGTAGTAAAATAGCGGGTTTGGATTGATTTTTTATTGATTTTGAAGAAAATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTGGATGGGTTTTTAGAGTACCTATGAGGAATTAAAACTTTAATATCATAATGTTTCGTGCTGGTATAACTCTTGTTTTTAGAGTACCTATGAGGAATTAAAACTGGTGCAGGTGATAACTCAACAACTTTTAATATACCTGATGTTTTTAGAGTACCTATGAGGAATTAAAACTTTATAATGGTTGG # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGAATACCTATGAGGAATTGAAAC # Alternate repeat : TTTTAGAGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 4 152640-152142 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 152639 30 100.0 35 .............................. TATGAATGGTTTGATATTCAAGCAACGTCACCTAA 152574 30 100.0 37 .............................. CATGTAAGAGCGTTTGCAAAAGCGATAGCAAAACAAC 152507 30 100.0 37 .............................. TCTCTTGTTGATACTGTTCATGCAGCTGGACTAGTTG 152440 30 100.0 36 .............................. AAAATATAAATAATAAAGACTTTAATATAAATATAA 152374 30 100.0 37 .............................. GTGAAGCCCACCTCAAGATTAGATTTCCCATAACATA 152307 30 100.0 38 .............................. GGTTATGTAGCTGTCGGAGGAGATGGTGAGGGCATTTG 152239 30 100.0 38 .............................. CAATCATGCGGTTGGATGGCGATAGAAGGTGTATGTAA 152171 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 37 GTCTTTAGAGTACCTATGAGGAATTAAAAC # Left flank : ATTGAAACAAAAATAATTTGCAATTCAGACTCAAAAACATCGTAGTTTTTAGATTACCTATAAGGAATTGAAACTATGGGTGAAATAGAGAAAGAGATGGTATGAGGTTATAGAAGGATAATGGACTACGTCCAAACCTCATGTAGGATTGTATTTAGAATACCTATAAGGGATTGAAACTGTGGATGAAATAGAGAAAGAAGTTGGATGTGGTTAAAGAAGGATAATGGATCTTACGACCCAAACCCCTGGTAGGATTGCATTTAGAATACATATTATTATATTTTAATATATTAGAATTTGCTGAATTGGAAAGTTAAGAGATAAATAAATATAACTTAAAATTTGTCGTCGACCCTGAGTAGTGTAAAAACACCGGGGGGTCGACGATTTTTCAGTTTGTAGTAAAATAGCGGGTTTGGATTGATTTTTGATTGATTTTGAAAAAGATTTGTAAAAGTTGATTTTTTGGAGAAGCTGATGTATGCTATATTAGATGG # Right flank : TGTGGGTGAAATAGAGAAAGAGTTTGGATGGAGTTAAAGAAGGATAATGGGTCTAGCGACCCAAGCCCCAGGTAGGATTGCATTTAGAATACATATTATTATATTTTAATATATTAGAATTTGCTTAATTGGAAAGTTAAGAGATAAATAAATATAACTTAAAATTTGTCGTCGACCCTTAGTAGTGTAAAAACACCGTGGGGTCGACGATTTTTTAGTTTGTAGTAAAGTAGCGGGTTTGGATTGATTTTTTATTGATTTTGAAGAAGATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTGGATGGGGTTTTAGAGTACCTATGAGGGATTGAAACAAAAATATGCAAAAAAGGATTCTGCTGGTGAAATTATGGGTTTTAGAGTACCTATGAGGGATTGAAACTTAGAAAAATTTCTAACATGTTTCTTTAGGTCTACAAGTTTTTAGAGTACCTATGAGGAATTGAAACCTTTTTGTTAGTTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTAGAGTACCTATGAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 153957-153513 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================== ================== 153956 30 100.0 35 .............................. ATGGCTATAAAAGTAATTGATGGTATAGTGCATCA 153891 30 100.0 37 .............................. TATTCAGGAATCAGTGGAAACAACAGACGTGTTAAAA 153824 30 100.0 37 .............................. AATTCTTCAAATTCAAACTCATTTTGAATTTTCTCTA 153757 30 96.7 79 .....................G........ TGTGGGTGAAATAGAGAAAGAGACTGGATGGAGTTAAAGAAGGATAATGGGTCTAGCGACCCAAGCCCCAGGTAGGATT 153648 30 83.3 76 .CA......T.......A...G........ TGTTTATGAAATGTAGAAAGAGATGGTATAAGGTTATAGAAGGATAATGGACTACGTCCAAACCTCGTGTAGGATT 153542 30 83.3 0 ..A....A.G....C......G........ | ========== ====== ====== ====== ============================== =============================================================================== ================== 6 30 93.9 53 GTTTTTAGAATACCTATGAGGAATTGAAAC # Left flank : TTAAGAACTTTTTACGTTTTTAGAATACCTATAAGGAATTGAAACAGAGTAATAGAGCTATATTGAATATGACTATTAAATGTTTTTAGAATACCTATAAGGAATTGAAACTATTTTTCATCAAAATATAAAAACAATTTTTCTATCTTTCGTTTTTAGAATACCTATAAGGAATTGAAACTATGGGTGAAATGGAGAAAGTGGTTGGATGTGTTATAGAAGGATAATGGGTCTGGCGACCCAAACCCCTGGTAGGATTGCTTTCGGAGTACTTATTATTATATTTACGTATATTTGAATTTAGGAAATTGAAGAATTAATAGATAAATAAATCTAACTGAAAATTTGTCGTCGACCCTGAGTAGTGTAAAAACACTGGGGGGTCGACGATTTTTAAGTTTGTAGTAAAATAGCAGGTTTTGATTGGTTTTTCATTAATTTTGAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGG # Right flank : CGTTGGAAAATGGATAAAGAGGTTGGATGAGGTTAAAGAAGGATAATGGGTCTTACGACCTAAGCCCTAGATAAGATTAGAGGTATAATGAATCTCACGAATCAAGCTCTTAGTAAGATTAAATTTAGAATTTGTCGTCGACCCTTAGTAGTGTAAAAACACCGGGGGGCGACGATTTTTTAGTTTATAGTAAAATAGAGGGTTTGAATTGGTTTTTCGTTAATTTTGAAGAAGATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTGGATGAGTTTTTAGAATACCTATGAGGAATTGAAACATAATATCTTCTTTATCGTTCTGATCATAGATTGAAGTTTTTAGAGTACCTATAAGGGATTGAAACAAAAATAATTTGCAATTCAGACTCAAAAACATCGTAGTTTTTAGATTACCTATAAGGAATTGAAACTATGGGTGAAATAGAGAAAGAGATGGTATGAGGTTATAGAAGGATAATGGACT # Questionable array : NO Score: 7.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:-1.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAATACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 6 154646-154276 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 154645 30 100.0 38 .............................. CGATTTAGGTTGGCAGGATTTATGCAGTGATAACTTTA 154577 30 100.0 38 .............................. ATTGCATTGACTAAACTATCTTTATGTGTTGTTTCTAA 154509 30 100.0 38 .............................. AGCAATGGTATTTGGTACAGGCATTAAGAACTTTTTAC 154441 30 100.0 36 .............................. AGAGTAATAGAGCTATATTGAATATGACTATTAAAT 154375 30 100.0 40 .............................. TATTTTTCATCAAAATATAAAAACAATTTTTCTATCTTTC 154305 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 100.0 38 GTTTTTAGAATACCTATAAGGAATTGAAAC # Left flank : TTTAAGTAGAGCATATGAACTTGATAAAGATAGCATACCGTCAGAGCTTTCAGAAGATGAAAAAGTAAAAAAAGCAATAGAAAAGCTAGATATAATGTATTTGAGTAAGGAAGAAAGAGAAGTTTATGAAAATGATCTAAGGGCATTGATGGATTACAAGGCTCAGATAAAAACAGCTGAGAGAAATGGAATAAAAGAAGGAGAGAAAAATAAAGAAATTTTGGTTGTAAAGAATCTAGTAGATATGGGAATGGATGATGATTTTATAGCTAAAGCATCTGGTTTAGATAAATATGAAATTGAAGAAATTAAAAAATTAATAGATAAATAGAACTAACTTAAAATTTGTCGTCGACCCTTAGTAGTGTAAAAACACCGGAGGGTCGACGATTTTTAAGTTTGTAGTAAAATAGCGGGTTTTGATTGGTTTTTCATTAATTTTGAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGG # Right flank : TATGGGTGAAATGGAGAAAGTGGTTGGATGTGTTATAGAAGGATAATGGGTCTGGCGACCCAAACCCCTGGTAGGATTGCTTTCGGAGTACTTATTATTATATTTACGTATATTTGAATTTAGGAAATTGAAGAATTAATAGATAAATAAATCTAACTGAAAATTTGTCGTCGACCCTGAGTAGTGTAAAAACACTGGGGGGTCGACGATTTTTAAGTTTGTAGTAAAATAGCAGGTTTTGATTGGTTTTTCATTAATTTTGAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGGGTTTTTAGAATACCTATGAGGAATTGAAACATGGCTATAAAAGTAATTGATGGTATAGTGCATCAGTTTTTAGAATACCTATGAGGAATTGAAACTATTCAGGAATCAGTGGAAACAACAGACGTGTTAAAAGTTTTTAGAATACCTATGAGGAATTGAAACAATTCTTCAAATTCAAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAATACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 7 156326-155855 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================== ================== 156325 30 100.0 36 .............................. TTAACCCAGGGACTAAATTAAATCTAGGATAAACTT 156259 30 100.0 37 .............................. ATGTCAAATCTAAAGGACTTTTAAACCCTATTAATCT 156192 30 100.0 36 .............................. TATATTTACATCTCTGTAACCAATTAAAAAATGATT 156126 30 100.0 79 .............................. TGTGAGTGAAATGAAGAAAGATATTATATGAAGTTATAGAAGGATAATGGGTCTTACGACCCAAACCCCTGGTAGGATT 156017 30 90.0 37 .C...C...........A............ ATGTTAAGATTAATTATATCTGTTTATCTTTGTTTTA 155950 30 100.0 36 .............................. AAAACATTGTTCATTTCTTTTTGTATTTTTTCACCA 155884 30 93.3 0 ........................CA.... | ========== ====== ====== ====== ============================== =============================================================================== ================== 7 30 97.6 44 GTTTTTAGAATACCTATGAGGAATTGAAAC # Left flank : TTGAAACTCATAAATTTTAAGTGTTTTAGAAGAAACATTTCCTTGTTTTTAGAGTACTTATAAGGAATTGAAACTGTGGGTGAAATGAAGAAAAATATTATATGAAGTTATAAAAGGATAATGGGTCTTACGACCCAAACCCCTGGTAGGATTGCTTTCAGAATACCTATGAGGAATTAAAACTGTGGGTGAAATGGAGAAAGAGATTGAATGTGGTTAAAGAAGAATAATGGACTTCGCCCAAACCTCTGATATGATTGCATTCGGAGTACTTATTATTATATTTACGTATATTTGAATTTAGGAAATTGAAGAATTAATAGATAAATAAATCTAACTGAAAATTTGTCGTCGACCCTGAGTAGTGTAAAAACACCGTGGGGTCGACGATTTTTTAGTTTGTAGTAAAATAGCGGGTTTGGATTGATTTTACATTAATTCTGAAGAAAATTTGTAAAAGTTGATTTTTTAAGAAAGCTGATGTATGCTATATTTGATGG # Right flank : AGTGGGTGAAATGGAGAAAGTGGTTGGATGGGTTAAAGAAGGATAATGGGTCTGACGACCCAAACCCCTGGTAGGATTAGAAGTATAATGGGTCTATCTAGTCGATTTCCTGGTAAGATTCTATACAAATATGATGAAGCTGTGTTATGATGATATAAAGTAAAAAAGGTTGGAGAGTGAATGAAATGTGTAGGCTAAACCCAAAAGTTGACTTTGCATTTAAGAAGCTTTTTGGCAGTGAAGAAAATAAGGATATATTAATAGCATTTATAAATTCTATAATAGATGAAAATGAGCAAATAAAAGACATAATATTAAAGAATCCATATAACATAGCAGACTATAGAAACGGGAAAATGACGATTTTAGATATAAAAGCGGTGGATGATAAAGAAGTATGGTATGACATAGAAATGCAGATATCACAGCAGGATTTCTTTGATAAAAGAGCATTATATTATTGGTCGAAAGTGTACTCCAGTCAAATAGAAAGTGGAGAA # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.61, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAATACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 8 158270-157504 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 158269 30 100.0 35 .............................. TTTATTAATTTGCTTGCTTGATCCTGTAAATCACT 158204 30 100.0 35 .............................. ATAACACTTAGATATATCGGAGTAGAGCAGCAAGC 158139 30 100.0 41 .............................. TGGGAACTGACTTGAATAGCTCTGTACTGACACTTGGTAAG 158068 30 100.0 37 .............................. TTTTTATATTCATAGTCAATTTTATACGGTATAAAGC 158001 30 100.0 36 .............................. ATATCTTGTCCTTTATAAAAGAATTCTGGATTAACT 157935 30 100.0 38 .............................. CTGTTTCCCCATTAGTATTTGTTGCTCCACTGCTTATA 157867 30 100.0 35 .............................. AGGCTTCATATAACGTAACAATTAAAGGTGGTACT 157802 30 100.0 38 .............................. TCCATTATGCTAGATGTGTTTTTGTTGTTTAAAACTGT 157734 30 100.0 37 .............................. TTAGAACATGAAAGTACTGAAGACTTTGGGCAATTAG 157667 30 100.0 38 .............................. CCCATTATACCGGCTGTAGATTTTTCCGGTAAACCTTT 157599 30 100.0 36 .............................. AAACTAAATCCGTAATTAGCCATTAGTTACTCCGTA 157533 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 99.7 37 GTTTTTAGAATACCTATGAGGAATTGAAAC # Left flank : ATTGAAACTGTGGGTGAAATGAAGAAAGATATTATATGAAGTTATAGAAGGATAATGGGTCTGGCGACCCAAACCCCTGGTAGAATTGCATTTAGAATACCTATAAGGAATTAAAACACAAAATATATTACTACTTTAGATTTTTCCTTACACAGTTTGTAGAATACATATACTGAATTGAAACAGTGGTGAAATGAGGAAAGAGTTAGGATGAAGTTAAAGAAAGACAATGGACTACGTCAAAACCTCTGATATGATTGCATTCGGAGTACTTATTATTATATTTACGTATATTTGAATTTAGGAAATTAAAGAATTAATAAGTAAATAAATCTAACTGAAAATTTGTCGTCGACCCTTAGTAGTGTAAAAACACTGGGGGGTCGACGATTTTTTGGTTTGTAGTAAAATAGCGGGTTTTGATTGGTTTTTCATTAATTTTGAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGG # Right flank : TGTGGGTGAAATGGAGAAAGAGATTGAATGTGGTTAAAGAAGAATAATATGGTCATAGCTACTAGACCATTGGTAAGATTGATTTTAGAGAATCTACTATTAAATTTAAATATATTGGAATTTGCTAGATTGAAGAATTAATAGATAAATAAATCTAACTTAAAATTTGTCGTCGACCCTTAGTAGTGTAAAAACACCGGGGGGTCGACGATTTTTTAGTTTGTAGTGAAATAGCGGGTTTGGATTGATTTTACATTAATTCTGAAGAAAATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGGGTTTTTAGAGTACCTATAAGGAATTGAAACATTCCATTGGCTTTAAGTCCTGTAGCATCAAACATTGTTTTTAGAGTACCTATAAGGAATTGAAACCTTTCTGCTGTAGCGATTCTTGTTGACAGCCCTGTGACGGTTTTTAGAGTACCTATAAGGAATTGAAACTCGCATTGATTCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAATACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 9 159679-159212 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================ ================== 159678 30 100.0 35 .............................. CTGGAAGTATAACTTATAATTTAATTTATATCTAA 159613 30 100.0 37 .............................. AAAAAAGGGGATGTTTTAAAAAATATTTGTATTTACA 159546 30 100.0 36 .............................. TATTTGCCAGAAGACTATGATACAAAGTACAGAAAG 159480 30 100.0 35 .............................. AATTCTATAAAGACCGTCAGCGGTGAAGCACTAAC 159415 30 100.0 38 .............................. AACTTTTTCCCTATGCGAAAAATTGCATAATATTTAGT 159347 30 100.0 76 .............................. TTTGAGTGAAATGGATAAAGAGGTTGGATGTGGTTAAAGAAGGATAATGGACTTCGTCCAAACCTCTGGGAGGATT 159241 30 90.0 0 .C...C...........A............ | ========== ====== ====== ====== ============================== ============================================================================ ================== 7 30 98.6 43 GTTTTTAGAATACCTATGAGGAATTGAAAC # Left flank : TTATAGAAGGATAATGGGTCTGGCGACCCAAACCCCTGGTAGGATTGCATTTAGAGTACCTATAAGGGATTGAAACTGTGGATGAAATGGAGAAAGTGGTTGGATGTGTTATAGAAGGATAATGGGTCTGGCGACCCAAACCCCTGGTAGGATTGCATTTAGAGTACCTATGAGGGATTAAAACTGTGGGTGAAATGAAGAAAGATATTATATGAAGTTAAAGAAGGATAATGGACTTCGCCAAACCTCTGATATGATTGCATTCGGAGTACTTATTATTATATTTACGTATATTTGAATTTAGGAAATTAAAGGATTAATAGGTAAATAAATCTAACTGAAAATTTGTCATCGACCCTTAGTAGTGTAAAAACACTGGGGGGTCGACGATTTTTTGGTTTGTAGTAAAATAGCGGGTTTTGATTGGTTTTTCATTAATTTTGAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGG # Right flank : AGTGGGTGAAATGAAGAAAGTGGTTGGATGTGGTTATAGAAGGATAATGGACTCCGTCCAAGCCTCTGGTAGGATTAGAAGGATAATGGGTCTGACAACCCAAGCCCCTAGTAAGATTGCTTTCAGAATAACGATTAGAAAATTTTAAAATGATAGAATAAATAAGTAAGAATTAAGAGATAAATAAAAGTAACTTAAAATTTGTCGTCGACCCTGAGTAGTGTAAAAACACTGGGGGTCGACGATTTTTTGGTTTTTAGTAAAATAGCGGATTTTGATTGGTTTTTCATTAATTTTCAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTAATGGGTTTTTAGAATACCTATAAGGAATTGAAACTGCTTTATGGTTTTGATTCTTTAGATCCTTTTATTGTTCTTAGAGTACCTATAAGGAATTGAAACTGTGGGTGAAATGAAGAAAGATATTATATGAAGTTATAGAAGGATAATGG # Questionable array : NO Score: 8.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAATACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 10 170459-169628 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 170458 30 100.0 37 .............................. ACGCAATTCCTGTGTCACCATCTTTGGGAGTGCTGGA 170391 30 100.0 37 .............................. CATCTACTTCTACCTTTAAATATACTATAGCTTTCAT 170324 30 100.0 38 .............................. GATGGAACGGATTTAGGTAATGGAACTTGGATGTTTCA 170256 30 100.0 36 .............................. ATTAATGTTAAGATTAATTACATTCGTTTATCTTCG 170190 30 100.0 35 .............................. TGTAAATGCAGATAAAAAAAGACTATATAGAAATT 170125 30 100.0 38 .............................. ATGCAAGTGCTACATGCATTAGACACGAAAGGTATAAA 170057 30 100.0 36 .............................. AGCTTCCCATAATTGTTCTTTTCTCCTGAAGAATTT 169991 30 100.0 37 .............................. AATTCTTTTTGGATTTTTTCTCCATCTAACCAAATCA 169924 30 100.0 38 .............................. CAAGTTTTAAAAGTATTGTACCAGAAGCTTTATCAATG 169856 30 100.0 36 .............................. ATGTAAGGGGGGTCTAAAGTAATGAAACCTAAAGTA 169790 30 93.3 35 .................A...G........ GCAAAAACGAAAGTACTGCTCCAGTTCGGGAAAAC 169725 30 96.7 38 .................A............ AATTTACCATCATACTTATGTGTGCACTTTGATCTTAT 169657 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.0 37 GTTTTTAGAGTACCTATGAGGAATTGAAAC # Left flank : CAACATTCCATATTCCACAGCTATGTTTTTAGAGTACCTATAAGGAATTGAAACTTTTCTAAGCTAAGAGTACTTGCAAAACAACGACATGGTTTTTAGAGTACCTATAAGGAATTGAAACTTGAATTCTATTTGTTCATATGAACAGCCATCTATGTTTTTAGAGTACCTATAAGGAATTGAAACTGTGGGTGAAATGGAGAAAGAGATTGAATGTGGTTAAAGAAGGATAATGGACTCCGTCCAAGCCTCTGGTAGGATTGCTTTCAGAATGACGATTGGCAACCTTTAAAATGATAGAATAAATAAGTAAGAATTAAGAGATAAATAAATAAAACTTAAAATTTGTCGTCGACCATGAGTAGTGTAAAAATACTGGGGAGTCGACGATTTTTTGGTTTGTAGTAAAATAGCGGGTTTTGATTGATTTTGCATTAATTTTTAATATAATTTGTAATAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGG # Right flank : CTGTAGGAAATGAAGAAAAGGTAGAATGAAGTTATAGAAGGATAATGGACTCCGTCCAAACCTCGTGTAGGATTAGAAGTATAATGGGTCTATCGAGTCAATTTCTTAGTATGATTCTATACAAATACTGTGAAGCTGTGTTATGATGATATAAAGTAAAAAAAGGTTGGAGAGTGAATGAAATGTGTAGGCTAAACCCAAAAGTTGACTTTGCATTTAAGAAGCTTTTTGGCAGTGAAGAAAATAAAGATATATTAATAGCATTTATAAATTCAATAATAGATGAAAATGAGCAGATAAAGGACATAGTATTAAAGAATCCATATAACATAGCAGATTATAGAAATGGAAAAATGACGATTTTAGATATAAAAGCGGTGGATGATAAGGAAGTATGGTATGACATAGAAATGCAGATATCGCAGCAGGATTTTTTTGATAAAAGAGCACTGTATTATTGGTCAAAAGTGTATTCGAGTCAAATAGAAAGTGGAGAATAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 11 171070-170773 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 171069 30 100.0 37 .............................. ACACTTGCATTTAAACTAAGTGTCTTAATAAATGTTA 171002 30 100.0 38 .............................. ATAACTTCTCGTTCCAACATTCCATATTCCACAGCTAT 170934 30 100.0 37 .............................. TTTTCTAAGCTAAGAGTACTTGCAAAACAACGACATG 170867 30 100.0 35 .............................. TTGAATTCTATTTGTTCATATGAACAGCCATCTAT 170802 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 37 GTTTTTAGAGTACCTATAAGGAATTGAAAC # Left flank : TGAAACCCTCCAAAACAAATATTACCGTCACCAAACACATTTGGTTTTTAGAGTACCTATGAGGAATTGAAACTGTGGGTGAAATGAAGAAAGATATTATATGAAGTTATAGAAGGATAATGGGTCTGGCGACCCAAACCCCTGGTAGGATTGCTTTCAGAATACCTATAAGGAATTAAAACCGCGGGTGAAATGGAGAAAGTGGTTGAATGTGGTTAAAGAAGGATAATGGACTTCGCCCAAACTCCTAGTATGATTGCTTTTAGAATACCTATTATTATATTTTGATATATTTCAATTTAAAAAATTAAAGAATTAAGATATAAATAAATACAGCTTAAAATTTATCGTTGACCCTGAGTAGTGTAAAAACACCGGGGGATCGACGATTTTTTAGTTTGTAGTGAAATAGCGGGTTTGGATTGATTTTACATTAATTCTGAAGAAAATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATACTTGATGGG # Right flank : TGTGGGTGAAATGGAGAAAGAGATTGAATGTGGTTAAAGAAGGATAATGGACTCCGTCCAAGCCTCTGGTAGGATTGCTTTCAGAATGACGATTGGCAACCTTTAAAATGATAGAATAAATAAGTAAGAATTAAGAGATAAATAAATAAAACTTAAAATTTGTCGTCGACCATGAGTAGTGTAAAAATACTGGGGAGTCGACGATTTTTTGGTTTGTAGTAAAATAGCGGGTTTTGATTGATTTTGCATTAATTTTTAATATAATTTGTAATAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGGGTTTTTAGAGTACCTATGAGGAATTGAAACACGCAATTCCTGTGTCACCATCTTTGGGAGTGCTGGAGTTTTTAGAGTACCTATGAGGAATTGAAACCATCTACTTCTACCTTTAAATATACTATAGCTTTCATGTTTTTAGAGTACCTATGAGGAATTGAAACGATGGAACGGATTTAGGTAATG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 12 172054-171388 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================== ================== 172053 30 100.0 35 .............................. TTATATCATTTGTAATTAAATTCTTAGCTATTACA 171988 30 100.0 35 .............................. CAGATTTCCAATCAGTTCTTTTTATCTTTCTCCTT 171923 30 100.0 38 .............................. AATATTACTTGCATTTCAGCATCCTCACAAATATGATG 171855 30 100.0 35 .............................. CGAGCAAAGTCCGCATTAAAACCTATTGTAGCCAT 171790 30 100.0 35 .............................. TTAGTAGTATTATTTAAACTAGGTGTATTATTACT 171725 30 100.0 36 .............................. ATAGCCTAAATATTCCTTTATTGTGCTATACTTATT 171659 30 100.0 36 .............................. AAGTATTAGTATTTTCTTGCTGTGTAGGTTGTTGAA 171593 30 96.7 37 ................T............. CCTCCAAAACAAATATTACCGTCACCAAACACATTTG 171526 30 96.7 79 ................T............. TGTGGGTGAAATGAAGAAAGATATTATATGAAGTTATAGAAGGATAATGGGTCTGGCGACCCAAACCCCTGGTAGGATT 171417 30 80.0 0 .C...C...A......TA.......A.... | ========== ====== ====== ====== ============================== =============================================================================== ================== 10 30 97.3 41 GTTTTTAGAGTACCTACGAGGAATTGAAAC # Left flank : GGAATTGAAACGAAAAAGAAGGGAAATTTAATAGAGGTATTTGCATCAGGTTTTTAGAGTACCTATAAGGAATTGAAACCTTGCAGATAGGATTAATGGTGGAACTTTAAGTTAAAGTTTTTAGAGTACCTATAAGGAATTGAAGCTTGTGGTAAAATAAAGAAAGAGGTTGGATGTGGTTATAGAAGGATAATGGACTCCGTCCAAGCCTCTGGTAGGATTAGAAGGATAATGGGTCTGACAACCCAAGCTCCTAGTAAGATTGCTTTCAGAATAACGATTAGAAAATTTTAAAATGATAGAATAAATAAGAATTAAGAGATAAATAAATCTAACTTAAAATTTGTCGTCGACCCTTAGTAGTGTAAAAACACTGGGGGGTCGACGATTTTTTGGTTTGTAGTAAAATAGCGGGTTTTGATTGGTTTTTCATTAATTTTGAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGGGG # Right flank : CGCGGGTGAAATGGAGAAAGTGGTTGAATGTGGTTAAAGAAGGATAATGGACTTCGCCCAAACTCCTAGTATGATTGCTTTTAGAATACCTATTATTATATTTTGATATATTTCAATTTAAAAAATTAAAGAATTAAGATATAAATAAATACAGCTTAAAATTTATCGTTGACCCTGAGTAGTGTAAAAACACCGGGGGATCGACGATTTTTTAGTTTGTAGTGAAATAGCGGGTTTGGATTGATTTTACATTAATTCTGAAGAAAATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATACTTGATGGGGTTTTTAGAGTACCTATAAGGAATTGAAACACACTTGCATTTAAACTAAGTGTCTTAATAAATGTTAGTTTTTAGAGTACCTATAAGGAATTGAAACATAACTTCTCGTTCCAACATTCCATATTCCACAGCTATGTTTTTAGAGTACCTATAAGGAATTGAAACTTTTCTAAGCTAAGAGT # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTACGAGGAATTGAAAC # Alternate repeat : GTTTTTAGAGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 13 173105-172408 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYT01000006.1 Clostridium felsineum DSM 794 CLFE_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 173104 30 100.0 37 .............................. TGAGTGTGGCGCACAAGGCTATAATGCAGCAGAAATA 173037 30 100.0 35 .............................. ATCTCTTCAAATTCTTCTTTTGAATCTACACAAAC 172972 30 100.0 38 .............................. TTCCATAAATATTTTAATAGTCTAATATTGGAAAAACT 172904 30 100.0 36 .............................. GCATATTCTACTATTTGAAATCCACCTTTTACTTCT 172838 30 100.0 37 .............................. TGTAAAAACATTAATCAAATGTAATAAAATACAATAA 172771 30 100.0 36 .............................. ATTCATCTATGGTCATATTGTTAAATTCATAGCTAT 172705 30 100.0 36 .............................. TTATTATAGCACCCATTGCCCCTTGTAATCGGCTAT 172639 30 100.0 37 .............................. TTCACCTTCATATCTAGTTATTTCATAGATACTTCTA 172572 30 100.0 38 .............................. GAAAAAGAAGGGAAATTTAATAGAGGTATTTGCATCAG 172504 30 100.0 37 .............................. CTTGCAGATAGGATTAATGGTGGAACTTTAAGTTAAA 172437 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.7 37 GTTTTTAGAGTACCTATAAGGAATTGAAAC # Left flank : AAAGAAAACTTATTATTATAGCCCATTTGAAAATGAATTTTCAGAGCTTGTAAGAAGAAATTTGATAAAAAAATATGAAGCTGCTTTTGGCAAGATGCCATTGGATGATAGTTTTGAAATAAAGGCTGTAAAAAATTGTAAATTAAGAGAAAAGGTAATTGTCTATAAAAGTACAGTCATAAAGGGTTGGAATGGTGAGTTTATTTTAAATGGTTCTAAAGAACTTATAAATGTTGGATATAATTCTGGTTTTGGATCTAAAAATGCTCAAGGATTTGGATGTATAGAGAAATGTATTGGGCGTGACTAATATTAAAAAATGTGACATTACTAATGTTATTTAATTTATCGTCGACCCTGAGTAGTGTAAAAACACCGGGGGGTCGACGATTTTTTAGTTTGTAGTGAAATAGCGGGTTTGGATTGATTTTACATTAATTCTGAAGAAAATTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATACTTGATGG # Right flank : TTGTGGTAAAATAAAGAAAGAGGTTGGATGTGGTTATAGAAGGATAATGGACTCCGTCCAAGCCTCTGGTAGGATTAGAAGGATAATGGGTCTGACAACCCAAGCTCCTAGTAAGATTGCTTTCAGAATAACGATTAGAAAATTTTAAAATGATAGAATAAATAAGAATTAAGAGATAAATAAATCTAACTTAAAATTTGTCGTCGACCCTTAGTAGTGTAAAAACACTGGGGGGTCGACGATTTTTTGGTTTGTAGTAAAATAGCGGGTTTTGATTGGTTTTTCATTAATTTTGAAGAAAGTTTGTAAAAGTTGATTTTTTGAAGAAGCTGATGTATGCTATATTTGATGGGGGTTTTTAGAGTACCTACGAGGAATTGAAACTTATATCATTTGTAATTAAATTCTTAGCTATTACAGTTTTTAGAGTACCTACGAGGAATTGAAACCAGATTTCCAATCAGTTCTTTTTATCTTTCTCCTTGTTTTTAGAGTACCTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //