Array 1 139978-143363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAKT010000001.1 Deinococcus wulumuqiensis R12 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 139978 37 100.0 36 ..................................... TGCTCCTCGCGCTGCTGGTCGGCGTGCTCGTGGGCC 140051 37 100.0 36 ..................................... TTCGGTCCCCGGCCGCCATGCAGCGCCAGGTGCTTG 140124 37 100.0 36 ..................................... CGGTGAGGCTCGCTCGCAAAAGGCCCTGAGCAAAGT 140197 37 100.0 35 ..................................... GACGGTCCAGTTCCTGCACGGCCTGTTCCACCGCA 140269 37 100.0 36 ..................................... ATTCATATCTCCACCCACGCCGAAGGAAACGGCACG 140342 37 100.0 35 ..................................... CCGAAGGCGCCCCGAAGATCATGTTCGTCTGGAAG 140414 37 100.0 36 ..................................... AGTGTCTGGACACCGAGCGCGGCACGGTGCGCGGCA 140487 37 100.0 36 ..................................... GTGTAGATGACCCACTCATCGCCGTTGGGCAGCACC 140560 37 100.0 33 ..................................... AGTCAATCGGCGTCTGGTCGAAGGCCAGAGCGG 140630 37 100.0 35 ..................................... TCTGCCATGTACGCGGCGTAACCGGGCGTGGCGGG 140702 37 100.0 37 ..................................... GAGGAACTGACGGGGCGGTTCGTGTGGGCGTCCCTGC 140776 37 100.0 38 ..................................... TGCCGCTGCCGGAAAAACCCCGGCCTGAGCCTCAGCCG 140851 37 100.0 36 ..................................... TGGTCCATATGGACACGGCCATCAACAGCGGGCCGG 140924 37 100.0 37 ..................................... AGTTCGGGGCTGAGTAGGGCCTGGGCTTTTGCTTCGA 140998 37 100.0 43 ..................................... CATGCCCTGGAGTCAGGCCTTCGTGCTGGCCCTGATCGCGTTC 141078 37 100.0 37 ..................................... GTGATTCGCGGGGACTGGGGGCGCCGGTGAAGCCCGG 141152 37 100.0 35 ..................................... TGACCACCACGCTGCTGCTGACCAACCCCGGCCCC 141224 37 100.0 35 ..................................... CGCCTCGGCTCCCGCTTCTCCTCCACCTTCTCCGG 141296 37 100.0 35 ..................................... GTCTCGCGCAGGATGATGTTCGGCTCCTTGAACGC 141368 37 100.0 35 ..................................... GTCTATAACCCGGACGGCACTCCCAAAATGGCCTA 141440 37 100.0 36 ..................................... AGTTCAAGCCGAAAGCGGCAGGTAGGTGTGAGAGGT 141513 37 100.0 35 ..................................... CAGCAGCCCGGAAATGAGGCGCGTGGGCTTAGGCA 141585 37 100.0 37 ..................................... GTGATTCGCGGGGACTGGGGGCGCCGGTGAAGCCCGG 141659 37 100.0 35 ..................................... GTCTCGCGCAGGATGATGTTCGGCTCCTTGAACGC 141731 37 100.0 35 ..................................... GGCACCAGTCGCTGATTTCTCGCTGGGAAGCAGAC 141803 37 100.0 35 ..................................... AGCCACGTCATCTTCTGGTGGCAGAAATCGGCAGA 141875 37 100.0 37 ..................................... GACTGACGCCGTAAACGTAGCCGGAATTGAGGGAGCC 141949 37 100.0 34 ..................................... GCTCAGGGCACGGTCATTCAGGGCAACGTGCCCG 142020 37 100.0 35 ..................................... AGCGCAGCACGCACGGCACGGTGCTGCTCACGCTC 142092 37 100.0 36 ..................................... CGCCATCATCGGGCCTATGGGAGTGACCACATGGCT 142165 37 100.0 34 ..................................... CCGAGTGAGCAGGTGCGCGAACTTGGGGCGTACC 142236 37 100.0 34 ..................................... CCCGCTCGGCCAGCGCCACAGCCTGGGCGTGTAG 142307 37 100.0 34 ..................................... CTGTTGCTGGCGGTGGGACTGCTGCCCTGCCCAA 142378 37 100.0 35 ..................................... TCCGCGACGGCGCGACGTGGCAGGAAGTCACCAGC 142450 37 100.0 35 ..................................... GCTCAAAAAGTGGGGCGACGAGACGCTAGACCTCT 142522 37 100.0 37 ..................................... AGTTGGACGAGATCCTCCAGGCGAACGAAAGCCTGAA 142596 37 100.0 37 ..................................... AGACGCTGCACGTCACCAAAGACGGCGCAACCCTCGA 142670 37 100.0 35 ..................................... TACCTGCTGTTCCAGGGCAACGCGAACGCCGCCAA 142742 37 100.0 34 ..................................... CCCGCGACGGCGAGTACATCGACGGCGGCGACAA 142813 37 100.0 35 ..................................... TGCGGCGTGCCATAGCTGTCGCGCTGGGTCAGCCA 142885 37 100.0 36 ..................................... GTCAGCGCAGGCTTGTTCATCTCGGCTTCGAGGTCG 142958 37 100.0 35 ..................................... CTCACGCCGAGCCATGTGCGGAGCCTCGCCCGGAA 143030 37 100.0 44 ..................................... CGGCAGAGGAGAGGGGCGGCAAGCGCAGGCCAAAGGCCGGGAAC 143111 37 97.3 35 .........G........................... GGTAGGGGAGAGGGCGCTTCGGGCATCGGGACGAA 143183 37 97.3 37 .........G........................... AGGAAACAGGGCTTGCGCTGCCTTCATCGCTTCGAAT 143257 37 97.3 33 ...........................C......... AGACAGCAGCGGCAGCAGCGAACTCCGGCGAGC 143327 37 94.6 0 ........A.G.......................... | ========== ====== ====== ====== ===================================== ============================================ ================== 47 37 99.7 36 GCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAAC # Left flank : CACGCAGAGCCGCCTGATTTGCGAAGCGTTGTCACGGCAATTTTGCCGCTTTTCGGTGATGAGCAACCCAGAGATCCGCTCCTCATGGAAAATAAGAGTGTGTCAGACACACCGCAAATGGCCCTATCCAACGTCTCTCCTGTCATTTGCGACCAACATGGACAGGCTATACTTTTGCCGTGATGGAGGCATCACGCGCTACATGACAGCCCAAATGAATTTGAGAAAACGCGTGAAATAAGCGGCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAACATTCATATCTCCACCCACGCCGAAGGAAACGGCACGGCCACATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAACATTCATATCTCCACCCACGCCGAAGGAAACGGCACG # Right flank : ACGAAGATCAAGAACCTGCGCCGGCCGCTGGCTCGTGGCTGGGCCGCTAGACCAAGGATTCGCTTACCCAGAATCGACCTGTCAACACGGAAAACAGCCAAGGCTTTTGTGCCACAGTTGTGCCACAGTTTTTCTGGAAAGCCTTGGAAAAAGCCGGAAAAAGCCAGACGCCTCACACGCAAAAACCCTCTCCCAGTGGGCGTTTTTGGAACATCACGGAAAATGCCGGAAAACCCGGATGAGTATTCGTAATCAGTAGGTCGTCGGTTCAAGTCCAACCCTCAGCTCCAAGAAAAAGCCCCGCCTAGCGCGGGGTTTTTGCTTTAGTGGTTTGCAGTAGGTGCGCCACCAAACGGGTTGTGCCACAGCTCAGTAGGTGACAACTTCGTCTCCAGCCGCGCCTGGCGGGCAGAAAGGACGGGTGAGCAGTTCCAGGAAAGCCCTGCATCGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 47-4699 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAKT010000149.1 Deinococcus wulumuqiensis R12 297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 47 37 100.0 35 ..................................... ATCCGGTCAAGCTGAATCGCGTGGTCTGGGTAGAG 119 37 100.0 35 ..................................... CTGCGGGCATCGCCAAACAAGCCCGGCAACGCAAA 191 37 100.0 34 ..................................... CTCCGACAGTGACTCATCCTCCGAACGGTAGGAC 262 37 100.0 34 ..................................... CAGAACGGGTCTAGAGCCACCTCGCGCACCGCGT 333 37 100.0 33 ..................................... TCCTGAAGGACAACGGGCGCGGCAGGCAGCGGG 403 37 100.0 35 ..................................... ACCGACGAAAACGGCAACCCCGTGGAAGCCGTGAG 475 37 100.0 35 ..................................... AGTGCTGCTCAGTGCCTCGGCGCGGGCCTGCTCAG 547 37 100.0 34 ..................................... ATACCGCACGCGCTCCGGCACACGCTGGGCGAGG 618 37 100.0 34 ..................................... CTCTCCGATGAGGGCGGTTGGGATACCCCGTTCC 689 37 100.0 33 ..................................... AACTCAAGGGCGTGAACGGCATGAACCAGACGA 759 37 100.0 32 ..................................... AGCGCGTCGGTGTCGCTGACCTCAGTGCCGGG 828 37 100.0 34 ..................................... AGCATTAGTCATCCATTGACCCTAAGAGCATGGA 899 37 100.0 34 ..................................... AGCGGGGAGTGGCCTGAGTTCGTCGGGGTCAAAG 970 37 100.0 34 ..................................... AGGCGGCCTTGCCGACGACTGCCGCCATCAGCCG 1041 37 100.0 34 ..................................... TTCCAGGAGCCGCACCGCCTCTTGGTCCAGCGCG 1112 36 81.1 33 ...........................C.-C..CGCT GGCCGGTGGCGCCCGAGATGTTCCGCCAGCGCG 1181 37 100.0 34 ..................................... GGCTCTGGAACCTCGGTGCAGGCGTCCTACTCGG 1252 37 100.0 34 ..................................... ACACGCGCATGGAAAACGCTACAGAGGCGGAACC 1323 37 100.0 34 ..................................... TTCTCGCGCCGCCGCTCAAGCTCCATGGCGGCTC 1394 37 100.0 35 ..................................... CGGCCCGGAGGCGCGGCCACCGAACGTCTTGAGCG 1466 37 100.0 37 ..................................... TTCGCGCTGGTGGTCGCGTGCGCGGTCAACTGCTGCA 1540 37 100.0 35 ..................................... TCCTGCATCTTGGCGCGGGTCTCGGCAACCATCGC 1612 37 100.0 35 ..................................... TGCCGGGGGCAGGTAGGGGCCGACCAGCTCAGCCG 1684 37 100.0 34 ..................................... CGGGCGAGTGCCTAGCGGCGAGCGCCTTCCCTGC 1755 37 100.0 35 ..................................... TCCTGGCACGCCCGAAAAGCTACCCTTCCTCTTTC 1827 37 100.0 34 ..................................... ATAGTTGACTAACCTCATAGTCTGCCCGCTGGGT 1898 37 97.3 33 .....................A............... CCCCGTTGCTCTGGGTGGAAAAGATACTCTGTT 1968 37 100.0 36 ..................................... TGGCAGTTCGAGGCGCAGACCAAAGCCGCCCGCGCC 2041 37 100.0 33 ..................................... CCCCGGACCTCCAGCTCCAGCCCCAGCACGTCA 2111 37 100.0 19 ..................................... ATTCGGCAAGCATACTGCC Deletion [2167] 2167 37 100.0 34 ..................................... CCGGCTGCCACGCCAGAACCACCAGATACCCGCC 2238 37 100.0 34 ..................................... ATAGCCTTCAGGCGTCAGCTTCTTCGCGCAGTCG 2309 37 100.0 36 ..................................... TGGTAAGCGACGCGCGCGCGATCTTCGCGGCGCAGG 2382 37 100.0 34 ..................................... CCTCAGTTGCCAGGGCCGTTAGGTCGCGCTGTAG 2453 37 100.0 35 ..................................... GACAGAGACCCCGTCCAGAGGACTCAGCGGGTCCG 2525 37 100.0 36 ..................................... ACTGTCGAGGCGAACGATTATGACGACGATCGCCGG 2598 37 100.0 34 ..................................... AGGGTCAGGGTGCGCTGGCCCTCGGCGTCGGCCA 2669 37 100.0 33 ..................................... ATCAGGTCAAGGTGCTCAGCCATGCGAGCCTCC 2739 37 100.0 33 ..................................... AAAGGCAGCCCCGAGCGCGTCCGCTTCGGCGGC 2809 37 100.0 34 ..................................... TCGCCGAGGCCTGCCTCGCGGTGGGCGACTATGC 2880 37 100.0 35 ..................................... TCTCTGATTCTGTTCTGAACTTGGATTTGGCCTCT 2952 37 100.0 34 ..................................... CATCGGGAGGAATGAACCCGCGGAGAGGTCGAGG 3023 37 100.0 37 ..................................... ACGATGTCGCGGGCAATGACCACCACAGCGTCACGGG 3097 37 97.3 34 .........................A........... ACGCCCTGGCTGGCCCGCATCGGCGCCCTGTTCG 3168 37 100.0 33 ..................................... ACCAATCCGATGCTGGCGGCCCTGGCACCGGCG 3238 37 100.0 33 ..................................... CCGACAGGCGACAGCGTGACGATGAACGCCGCC 3308 37 100.0 35 ..................................... AAATGGGGGCAGAATGACCAGGGGATTAGAACAGG 3380 37 100.0 35 ..................................... TAGCTACCGTAAAAACGCCCGCTGGCCGTGCCCTG 3452 37 100.0 33 ..................................... TCAGCTAGCCCGCGCAAGTGCCGCCCGCCTGGG 3522 37 100.0 34 ..................................... CCATGACGTTTGACCCGAGTGCCCTGCCCCCCAT 3593 37 100.0 34 ..................................... ACCGATACGGAGCTGTCCGCCGCTCTCCGTCGTG 3664 37 100.0 35 ..................................... CTGCATGATGCCCACGCTGAGGGTTGCCCTGTCCC 3736 37 100.0 32 ..................................... TTCCGAGAAGGGTTGCCACGTGTCGACCGCGC 3805 37 100.0 34 ..................................... CTCCGAGGGACGCATTCGCGTGCTTGTCACGAAA 3876 37 100.0 35 ..................................... TCAAGCGGATGCTTATCGGTCATGCGGGGAGTCTG 3948 37 100.0 35 ..................................... CCGCTATCCAGGGTAACGAGTCCCGTAACGGCACA 4020 37 100.0 36 ..................................... CTGAACACCGAAATCATGCCCGCCTGGGAGCGCGGG 4093 37 100.0 33 ..................................... AGCGCGGTCATGGGTGCCGCCTAAGACGCCCTG 4163 37 100.0 35 ..................................... TTGCGCTGCCCGTGCGCGGTGATAAGTGCCCCGAG 4235 37 100.0 34 ..................................... GCCGGGGGGTTGGCCGCCGGGTCAAAGACCGCGT 4306 37 100.0 34 ..................................... AAAACGTCGCTCTACGCCACCGCCACAGCGGTTG 4377 37 100.0 35 ..................................... CGTAACGCTCTCCGCGTGACACTGGAGACCGTCAG 4449 37 100.0 36 ..................................... TGAGCGACGACCAGACCACTCACGAGGTGACCCCAC 4522 37 100.0 33 ..................................... CTAGAGTTCCAGCGGCGGGGCGCTCCGCATCTG 4592 37 100.0 34 ..................................... TGCCGCCACGAGTCCGTGGGGAGCGCCGAGGACG 4663 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 66 37 99.6 34 GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Left flank : GGTGGATTGAAACTGTAGATGAGGCGTTGCAGTCCATGCTTGACGAG # Right flank : TGTAGATGAGGCGTTGCAGTCCATGCTTGACGAGTTCCGCCCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : NA // Array 1 47-579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAKT010000011.1 Deinococcus wulumuqiensis R12 21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 47 37 100.0 34 ..................................... CGGCCCCTAGAAGTCGCCATCGAGTACACGACGC 118 37 100.0 33 ..................................... CTCGAACTGCCGCTCAGTCTCCATGCCGAGCAT 188 37 100.0 34 ..................................... CCAACCTGACCAACGCTGTGAACGGCAACACCAA 259 37 100.0 34 ..................................... CTCTCCCGAAATCGTGGCGGAGAGGGTGTCGTCA 330 37 100.0 34 ..................................... GTCTCAAAACGTGTGTTTCGGCAGGGACACAACG 401 37 100.0 34 ..................................... AAAGGGCGAGCCGTGATGATGCTTGAGCAGGTAT 472 37 100.0 34 ..................................... CCTGCCCCCACGCCCTGTGATGCCCGCCAATTGG 543 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 8 37 100.0 34 GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Left flank : GGTGGATTGAAACTGTAGATGAGGCGTTGCAGTCCATGCTTGACGAG # Right flank : CAATGCCGCCCGGTGCGACGGTGTTGAATCGCGATTTCACGGCTGATGGGCCGAACCAAAAATGGGCTACGGACGTCACCTATCTGCCGACCACGGAGGGGTGGCTCTAACCCGCGACTGCTATGGACTTGTTTTCTCGGAAGATTATCGGCTGGGCGCTGGATGAGCGTCTATATACGCCGCTGGTGAAATGGCTGTAGAGCGCCGTCAGCCTTCAGGAGGGCTCTCGCACCGCTCGGATAGGGGGAGCCAGTACACCAGTGAGGTCTACCGCCAAGCCTTGGAAAGGCTTGAAGCCGTGCAGAGTATGAGCGGCAAGGGGGAATGCTGGGATAACGCTGTTCAGGAAAGCTTTTTTGCAACTCTCAAGACTGAGCTTGCACTGCATGACCCCCAGTGGGGCCGTGCCCAGACGCGGAGCGAGGTTTTTGAGTGGATTGAGGTTTTCTACAACCGTAAGCGCCGCCACTCGGCGCTGGGCTACCTGTCACCGGTGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 2 52410-54292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAKT010000011.1 Deinococcus wulumuqiensis R12 21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 52410 37 100.0 33 ..................................... AGCCAGGACTACCGCCACACTGCCCGTGCCATC 52480 37 100.0 34 ..................................... GTTTCATGGTCTGGCTCCTACGACGATGAGCGAG 52551 37 100.0 35 ..................................... TTGTTGCGCTCAATCCAGCCATACCCGCAGATGTC 52623 37 100.0 35 ..................................... TCGCGCATCTCGGAGCGCAACCTTGCGCGGGCGTG 52695 37 100.0 34 ..................................... TGGGGTTGCTGGAACTACAGGCACCCTGAACCCG 52766 37 100.0 36 ..................................... ACGTAAAACGTCACGGTGAAACAAGCCCGCCGCTTG 52839 37 100.0 32 ..................................... GATTACCGCCGCACACAAGGTGCCCTGAGCAG 52908 37 100.0 35 ..................................... TTCGGTATCATGAAGCCATGACCGGAGACATCGTG 52980 37 100.0 34 ..................................... CCCGCTCGCAAGGGTGAAGAGCTGGTCTACCGGC 53051 37 100.0 33 ..................................... AACTTTTCCGAACTGGGTCAGGACATACACTCG 53121 37 100.0 32 ..................................... TCGCCCCAGTGGAACGAGCCGCTGGAGACGAC 53190 37 100.0 34 ..................................... ATACCGGGCCACGCTGATAAGCGCGTCGCCCGCG 53261 37 100.0 35 ..................................... ACCTCGCTTCCGGCTACGCCGCCGCGCATTTCACC 53333 37 100.0 34 ..................................... CCCCCGTCACCCTGCACCTGAGCATCGACGGCGC 53404 37 100.0 34 ..................................... ACGATTAACAAGATGAACGGCGTGGCGCTGAGCA 53475 37 100.0 35 ..................................... GCCGCGTGGTTGTGGGTGCTGCGGTTCGTGCTTGT 53547 37 100.0 32 ..................................... TCAAGATTTGACGGGGACAGACCGTGAATCCC 53616 37 100.0 33 ..................................... CTCCTGGTGGCTCAGGCAGCGGCGCAGGCCGGG 53686 37 100.0 33 ..................................... AACGTCAAAACACTCGCCGACGCCTGCGCCTGC 53756 37 100.0 34 ..................................... TCCGGTACGCAGACCATGCTGCTCATCACCTTGC 53827 37 100.0 34 ..................................... TCGCGGTCCTCGGTCTGCCGCTGCGTCACGGCGT 53898 37 100.0 35 ..................................... GCTCCCCCCAACACGCATCGGGGGTACCCCTCACC 53970 37 100.0 35 ..................................... ACGCTAAATCTGGCAGGCAACCCGGCCTACTTCGT 54042 37 100.0 33 ..................................... CGCAGCCAATCCACGTCCTGCATGGTGGCAGGG 54112 37 100.0 34 ..................................... CCGATTGGCCGGTTCGCACCAGGTGGATGTTGTT 54183 37 100.0 36 ..................................... ACCGGGACGCCTACCGATAAGCATGACGACCAAGTG 54256 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 27 37 100.0 34 GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Left flank : CAGGGCCCACTATCCGCCGTACCTCCACCGATGATTGACTTACTGGTCTGCTACGACGTGAAAACCGAAACCGAGGCCGGACGCCGCCGCCTGCGCCGGGTCGCCAAAATCTGCGTGGCGCACGGGCAGCGCGTTCAGAACAGCGTCTTCGAGGTCGGCGTCACCGACGTTCAACTGCTCCAGCTGCGCGAGAAGCTACTGAACGCTATGGACGTGACCGAGGACAGCATCCGCATCTACCGCCTGCGTCAGCCCCGCGAAAAATTCGTGGAGGCGCACGGCGTGGATAAGTACATGGATTTCAGCGAACCCCTGATTCTGTAGCGCGAACCTGGTGCGACGGAAAAGACCGGGAGGTTTCGCGCCGCCTAAAAAGTCCGTACAGGACGAGCCGCATGACAAATAGATATTTCCGATACGTCCCCCTTTCTGGACTTCGGCGCAGGGTTCGCGCAAACTGATGTCGGGAAGTCGTCTGGCACGTATTTAGACGATGAACT # Right flank : TGTAGATGAGGCGTTGCAGTCCATGCTTGACGAGTTCCGCCCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //