Array 1 125857-125156 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFI01000004.1 Escherichia coli strain MOD1-EC6004 MOD1-EC6004_4_length_233712_cov_39.1727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125856 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 125795 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 125734 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 125673 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 125612 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 125551 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 125489 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 125428 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 125367 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 125306 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 125245 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 125184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142988-141373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFI01000004.1 Escherichia coli strain MOD1-EC6004 MOD1-EC6004_4_length_233712_cov_39.1727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142987 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 142926 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 142865 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 142804 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 142743 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 142682 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 142621 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 142560 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 142499 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 142438 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 142377 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 142316 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 142255 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 142194 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 142133 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 142072 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 142011 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 141950 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 141889 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 141828 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 141767 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 141706 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 141645 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 141584 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 141523 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 141462 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 141401 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //