Array 1 531-2252 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWZX01000011.1 Neisseria meningitidis strain INS-Nm1013 NODE_11_length_45942_cov_47.6354, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 531 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 597 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 663 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 729 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 795 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 861 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 927 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 993 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1059 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1125 36 100.0 66 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1227 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 1293 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 1359 36 100.0 30 .................................... GCCTAGTTCCGGATTGTCAATCATCCCAGC 1425 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 1491 36 100.0 30 .................................... AAATCGGAATATTTCGTCAGCGTTCAAGAG 1557 36 100.0 30 .................................... TCTGTGCGTTTGGATGCGGATGAGGCGGGA 1623 36 100.0 30 .................................... TCATTAAATGATGTATCACAAGCACTTTTT 1689 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 1755 36 100.0 30 .................................... AAACTTACCCCATTGATAAGGAAGCGGTTT 1821 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1887 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1953 36 100.0 30 .................................... GTGCGTAGTCGTATTGACGCTCGTGCTGAC 2019 36 100.0 30 .................................... TGTTGTTGCAGGTCGATGGTTAGGGGTTCT 2085 36 100.0 30 .................................... TCCCTTAACCTGAAACGGAGTAATTAAAAT 2151 36 100.0 30 .................................... ACCATGGTAATGATACAATCTATCATATGG 2217 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================== ================== 26 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //