Array 1 40608-39482 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAZA01000072.1 Escherichia coli strain R7AC NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40607 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 40546 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 40485 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 40424 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 40363 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 40302 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40241 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40180 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 40119 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 40058 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39997 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39936 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39875 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39814 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39754 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39693 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39632 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39571 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39510 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57297-56109 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAZA01000072.1 Escherichia coli strain R7AC NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57296 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 57235 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 57174 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 57113 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 57052 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 56991 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 56930 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 56869 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 56808 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 56747 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 56686 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 56625 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 56564 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 56503 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 56442 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56381 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56320 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56259 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56198 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56137 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //