Array 1 1968-2122 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCZ01000048.1 Streptomyces sp. WM6349 P397contig140.1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 1968 28 100.0 36 ............................ CAAAGGGCTCGCTGACGCCGTCCGTGAGGAGCGCGC 2032 28 100.0 35 ............................ ACAGAGGCTCGCAGACGCGTGATGGAGACGTGTGT 2095 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 3 28 100.0 36 AGCGATCGATGGCGGCTTATGTCCAGCC # Left flank : CCAGCCGAGTACGAAAACACCGCAGCCTGACCAACACAAACAACATGTCCGCCAAACAGGAACAACCCCAGACCCCAGGGCATAGGCCGCACCTAATCGCTACGCGCTCCTGACGGACGGCGTCTGCGAGTCTCTGTGGCTGGGCATAGGCCGCGCTCGATCGCTACGCGCTCCTCGACGACTGCGTCCGGCCCTCGTCTGGGGCTGAGGGGGGCGGAATCGAGGGGCGGGAGGGCGATCCATCGGCTCAGTCGATGCCAACCCCTATCAAGACCACGGTGAGATCCCACCCGTCGGCACAGGCAGGGGTAATTGGGGCATATTGGAGGCTCTTTGGGGCGCGCACTTGCCCAGGCATGGATTGGCATCGCCCCAGCCGTCATCTGACGTTTTTTCCTCCCCACGCGGGGGTCGGACGCCGTCCGTGAGGAGTGCCGGAAGGTTTCTGCGACCTCTGGCCAGCCCCAGACGGACCGCAGGCGCGTGATCGAGAAGCGCGC # Right flank : ACAGGGGCTCGCAGGCGCCGTCCGTCAGGAGCGCGTAGCGATTTGGGGCGCCCCCAGCTCCCGCCCGGGCATCTCCGACGCCCCGTCCCTGAAAGCTGAGACCGGCCCGTTCTTCTGGGGGCTTCCCGGCAGTCTTTCGGAATTCCGTGGCGGGACGGGCGGTCAAGGGTGGAGCGCAGCGACATCGCGAAGCGACGCGACGAAGGAGCGCCCTTGACGGGCCGGCCCGACGCGGAGAGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCGATCGATGGCGGCTTATGTCCAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 4577-3384 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCZ01000010.1 Streptomyces sp. WM6349 P397contig106.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4576 29 100.0 32 ............................. CTCGCGGTCTCCTCATCCGACGGGCCGCTGCT 4515 29 100.0 32 ............................. CTCGCGGTCTCCTCATCCGACGGGCCGCTGCT 4454 29 100.0 32 ............................. TGCCCGGCTGCTGTTCCAGCCAAGCTGAGCGA 4393 29 100.0 32 ............................. CAGGGACACGGCGAGTGGGAGGGCAAGAGCGA 4332 29 100.0 32 ............................. CCGCTCCTGCGGGCCTTCCTGCTGGCCTGCGT 4271 29 100.0 32 ............................. GGCGTGAACCACAACCGTCATAAGCGACCGGA 4210 29 100.0 32 ............................. GACGTCCGGCACGCCATGGACACCTCGAAGGT 4149 29 96.6 32 ..T.......................... CCTCGTCTGACATTCGCGCGACAACCGAGAAG 4088 29 100.0 32 ............................. GGGACGCGGCCCTTCGAGCCGCGGGCGGACTT 4027 29 100.0 32 ............................. GCCGGCACTCTCCGCACGAACCGCACCGGCAA 3966 29 100.0 32 ............................. TCATCCAGATGGCCCGCAAGTGCGGCATCAAG 3905 29 100.0 32 ............................. CACGCACAAGGAGGAAGGAAGCGGCGTGAAAG 3844 29 100.0 32 ............................. TCGACGGGCTGCGGGCCGACTCGCTGGCCGGG 3783 29 100.0 32 ............................. GCGTACGTCGGCTGCACGCTCTCGGGGAGCTG 3722 29 100.0 38 ............................. TTGGCGTGTGCGGTGCGGCGCTGGGCCTGCTCCTGCTC 3655 29 100.0 32 ............................. GGTACCGCCACCATTGCGCCGGAGGCATTCCG 3594 29 96.6 32 ............................T GGTGAGCGTGGCTTGCCTGACCGGCTGCGTCG 3533 29 96.6 32 ............T................ GTCATCGTCCCCGACGGACTGCTGATCCCGGA 3472 29 96.6 32 ................T............ ACCGGGTGACGGATCCGGCCCGTGTTCATGAC 3411 28 82.8 0 ....A................T.A.-..T | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 98.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ATCGTCACCCTCCAGTCAGACCGAGAGGTGACCGTTCCCGCTGGCCGCAACTACGCCGAAGCGGTGACCTGGTGACAGTCATCGTCCTCACTCACTGCCCGCCCGGCCTGCGGGGATTCCTGACCCGCTGGCTCCTGGAGATCTCTCCGGGAGTCTTCATCGGAGGCCCGTCGGCGCGCATCAGGTCAGTGCTGTGGCAAGAGGTGAAGCAGTACGCGGGAAACGGGCGTGCCCTCCTGGCGTACAGCTCGGACAACGAACAGGGATTCGCGTTCGAGACGCACGACCACAAATGGCACCCGGTCGACCGTGAGGGAGTCACCTTGATCCACCGCCCCAGCGCCCCCACCGCACAGATGCCACCACCGTCCTCAGGCTGGAGCAAGGCCTCCAAACGCCGACGGTTCGGAACACGTTGAATGCATTTGAGCTCTATGTCTAAATATCAAGAAGTAGTTCGTGGCGGCCTTCACACCGACTAAAACCTCAGGTCAGGAAGT # Right flank : GGCCGGGCCCAGCCAGAGGTGCTTTCCTGGGGATGCCCGGTGCCAACGGACCTACCCTTCACACCAGCGGGGGCTGGAGTGAGTTGGTACCCGGCGGACGCTGCCGCTGCCAGAATCTCGGAGGGCTGACAGCCTGAGCTCTCGTAGCTATTGGGTGAGTCTGGTGGGCGGAAGGCAAACTTCGGTCACTTCCTCGGCCCGGTTTCGCAGGAGCGGGGCCAATTCGACGTACCAGCCACGGCCCACGGCCTGAAGCATTTCGGCGAGGGCGATCTGTTCGCCGATCCGGCCGGCGGGGGTGTCGAGGACGTGGGCGAACTCGGCACGGATGCGGTCGGCGACGGCGGGGACGCGGAGGCTGTTCACGTACAGCATTGCGGGGTCGTAGCCGACGGGGACGGCGCCCCAGCGCTCCCAGTCCAGGATGACGAGGGGGTCGTGGGTGAGGTTGGCCCACTGGAGGTCGGCGTGCCCGGTGACGCGTTCGGTGATGGCCGGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 138642-136404 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCZ01000161.1 Streptomyces sp. WM6349 P397contig49.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 138641 29 89.7 32 G..........CG................ TACGTGCAGGACACCCCCGGCAGCGACATCGG 138580 29 100.0 32 ............................. TTTCCGGAGGCGACGCGGTTGGTGACGAACAC 138519 29 96.6 33 .......G..................... ACCTGCAGCACCGCGAGCACCTGCAAGTCCTGC AG [138497] 138455 28 96.6 32 ....................-........ GCCGGCCGCCCCCTCCGCGGCGAATGCGGAAG 138395 29 96.6 32 ....................A........ CTGAGCTCCAGCTCCGGCGCGTCCGTGACGAA 138334 29 96.6 32 ................T............ GTCCCGTCCGCCTCCGGGCCGCTCGCGCTGCC 138273 29 96.6 32 .............T............... GCCGGCACCGGGTACGAGGACTTGAGGCGGGA 138212 29 100.0 29 ............................. CTCCGGGTCTCGATTCCCGCCGTCTCGGC 138154 29 79.3 32 GA...G.T.C..............C.... TCCAGCCCGACGAAAGGGGAAGCCATGCTGCA 138093 29 93.1 32 ...T................C........ CAGTAGGAGCCGGTTTCCGGCGCCGTTCGGCC 138032 29 100.0 32 ............................. TCGACCTGACCCGCCGCCGGGAACTGCTCGTC 137971 29 100.0 32 ............................. TCTGCCCCCGGGGCTGCGGCTACGCTGGAGCC G [137954] 137909 29 100.0 32 ............................. AAGCTCCTGCCGTCGATCGGGCGGTTCAGCGG 137848 29 96.6 32 ..............T.............. GGGCAGGAGGAGTCGGCATCCAGGTCCAGGAA 137787 29 96.6 33 ........T.................... ATCGGGCACCTGGCCGTGTTCGATGCGCCTTCG 137725 29 100.0 32 ............................. TGGCTCGGCGCGATCCCCGGTCACCTCTACAA 137664 29 96.6 32 ..............G.............. GCCGCTGCCCAGACGAGGATCGGGCCCGTCAG 137603 29 93.1 32 ............T....A........... CACGTGCCCTGGCCGCCGCCGACGTTCATGCT 137542 27 86.2 30 ...........-...A....-.......A CCGCGGCTGGCGGAGAAGTCGGTGCCGTGG 137485 28 89.7 32 ........-........A......C.... GCCCTCAAGGCCGGCGGATCCCTGGCCGAGGC 137425 29 89.7 32 ................T....T.T..... ATCGCAGCCCCGCTGGATCAGCTTCGCCCCTG 137364 29 96.6 32 ..............T.............. GAGACCGGCATGCACGACATCAGGAACATCTT 137303 29 96.6 32 ......................C...... AAGGCCACCGTGCGGTACGCGTGGGGCCGCCC 137242 28 93.1 31 T.......-.................... GTCCCGAGGTGGCATCGGACTGCCTGGTGCC 137183 29 100.0 32 ............................. TACCTGGCGAACCTGCGGCCGGACGGCTCGGG 137122 28 96.6 32 ........................-.... GCCTTCTGCACCGCCCGGTCCAGGCCGTCCCC 137062 29 93.1 29 ................T........C... GCCACCGGCGGCGGTGGTTAGAGCGGCTG 137004 29 93.1 32 ......T.......T.............. ACCAAGGGCAAGTTGGTCACGATCGAGGCGCT 136943 29 93.1 32 TC........................... GCGGTCGTGATGCCGGTGACCGTGCCAGCCGT 136882 29 93.1 32 ......A.................A.... TTCTGGGGCCGGATCCAGATCGGCCCGGACGT G [136866] 136820 28 89.7 32 ........T.A.........-........ ATGCCGGTTCGCGCGGCGGACGACGCCTGCGT 136760 29 93.1 32 T.............T.............. ACCGACCTGTCGCTGGACCTTGCGGGCGCGCC 136699 29 93.1 32 .A...............A........... ATCCGCTGGTGCACGAAGTAGGGCGCCTCGAA 136638 29 89.7 33 ........T..C..T.............. TGCGCCGGCACCCGGCGGGTAACGACGAGTCCG 136576 29 96.6 55 .......................A..... TCCTGGGCGGTGGTCTGCTCCCCGCACCCTCAGTGGCAGGCGCTACCGTTGCCGT 136492 29 96.6 32 ...G......................... CACACCCTGCGCAGCCTGGCGGAGGCCACCTT 136431 28 86.2 0 .......A.......A......-.A.... | ========== ====== ====== ====== ============================= ======================================================= ================== 37 29 94.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCTGAGCTTGCCGGTGAGGAGCCGCTCGAACGTGAACTCCGCCTCCCCGTCCGCGCTGGTGGTGTCGACGAGCCACGCGGTCTGGAGCAGGTGCTGGAGCGCCTTGCGTTCGGTGTCTGCGGTGAACCTGCTGGCCTCCCCGTCGTAAAGGCCGTCCTGAGGCCGCGGCGCGAGGTTGAAGTCCCCGCAGATCAGCAGGGCCGCCCGCCCTCGGCGGCGGCAAGCGTCGCGAGCTCGCCAAGCTGGGTTGTGCGCGCCGCGCTGGTATAGGCGTCGAGGTGGACCTGAAGGACGGTGAGCCAGCCCAGTTCCACTCGCTGCGCCCAGCCGGTCGGTGCGGAGGCGGATGTCCTCGCGGACCCAGGTGGCGAGGTAGCCGTTCCCGCCCGCGAGGACGTACCCGGGCAGGAGCGGCGGGCGCCGGTCGACGGGCTTGTACGGCTCCTGCGCAACCCGCGAGGTGGTCCGGACGCGTCAGCGTAGGGGATGATGCTGCCCTC # Right flank : CACCGGCCACCTGCCCATGGTCGAAAGCCCCGGGGAATGGCAGCGGCTCATCACCGACTTCCTCGCCGAGCACGACGCCTGAGAGACGCACGACCCCGAGCCCGAGGGAGGGGTCCCGGGCTCGGGGTGTGGGGCCTGCCGGCGTCCGCCTACTTGAAGGTGACGTCCGAGCAGGAGTAGAAGGCCTCCTCGCTCTGGAAGGAGCCGTCGGGCCGCTTCAGCCCGTGCCAGATCGTGTAGATCAGGTGCTTGCCCTTCTTCTCGGGGAGCACCGTCTTGAACGTGAACGCCTTCGCGCCGAGGAAGCCCGAGGGGGCGGCCGTGGCCGCGGTGTTGTCAGCGCTGAGGAAGGGGGTGTCCTCCAGGTCGGACCACTTCAGCGGCTTCTTCGGGTCGTAGCCGTCCTTGGTGACGTACATCTCCATGCGGTACGGGTTGTGCAGCGCGCTGATGTCGTAGCGGAGGTCGTACTCGGCCCCGCCGGGTAGCGTCGTCGAGGG # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [26-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 144170-143898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCZ01000161.1 Streptomyces sp. WM6349 P397contig49.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144169 29 96.6 32 ....................T........ CTGAAGGACCGGATCACTCTCTGCCCCGACTT 144108 29 89.7 32 ...T..T.......T.............. ATGTCGCCGATGGTCACCTCGCCGGAGTTGGC 144047 29 96.6 32 .....T....................... ATCACCCGTGCCGCGGACCTTGCCCAGATCGG 143986 28 96.6 32 .....-....................... CTGCGTGAGGCGACCATGACCACACCTGACTT 143926 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCCGAGGGACTGGCGTCGATCAGACCGATGGCAAGGGCACGGCTGATGGCCAAGCGGTTGGAGCCCCACCGGTCCCTCGCCCCGGTAGGCGCGCTACTGGAGCGCGCGAAGGGCTAGCGGGTGGCCCGGTTGATCCAGTCCAGGTACTCGGCACGGCCGGCGTCGATCGTGAACGCGATGACCTCAGGCGAGTCATAGGGGTGGTTGTCCACCAGATGCTTCTCCAGTGCCTCGCGCCGGTCACCGGTCGTACGAAACGTCACCTGATACTCGATGCCCTCGCAGACCTCCCCGAGATGGCGGTACGTCGTTTCAATGGGCCCGGTCACCTGCCCGGAAGCGGCTAGGCTCGCCTCCACCGCCGAGCGCGACAACTTACGCGCAGCATCCTGATTGTCCACGGTCGTGATTACGATCAAGAAGTCAGCCATAGGGGCAACGTACCCACCCAACCAGTCGCACTCATATAGGAGGCAGTGAGACTTTGGGAGCACCGGCAC # Right flank : GACACTGGCCCTTCGCCTGGGTCATGGCCGCGCTTTGACTCCTACCGTTCCGAGCCGTCCCGGTCTTCCCCAGCGCCCTCGTCGCTGTCTCCGAAGATGGGACGAAGTACCTCTCACAGGTCGAGGTCGAGGCGCTGAGCGGGGATGGACAGAGACCGCTGGACTTCACTGCTGACGTTGGTCGCCGTCGCTCGCCACTCCGCGACGAAGGGGTCGGCTTCCTGGCTGCTGTAGACCGTGATCGGATCCAGCGTCACGGTCTCATGGGGACGAAGGTCCACCGGAACGAAGCGGATGAGGGTGCGGTCCTCCTGCTGCTCGATGTCTGGGGAATGCAGGGACGGCAGCTGGTAGGCCGGCGGCTGCACCCCGAGCATCCTCCGGTAGCCGCCGAGGGCGGGGATGGTGCCCGCTCCGTATTTGGCTGGCTGGGAAGGCCAGTCGATCTCTTCGTCTGTGTCGGCCGTGACATGCGCCGAAACGGTGTCGGGGAGGCTCAG # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //