Array 1 49620-47936 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKBD01000007.1 Lactobacillus helveticus strain TMW 1610 seq7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 49619 30 100.0 38 .............................. CGGAAAAGGTACGGAATGGATTCGGGTATTCATATTCG 49551 30 100.0 35 .............................. TAAAACAAAAAAAGAGGGGAAGGGAACTTAATCCC 49486 30 100.0 35 .............................. TCCGCCTACCTTGAAGTAATGCTTACCATTTTTAA 49421 30 100.0 36 .............................. TTTTGAAGTGATTGCTAATTTTGATAATAAAAATCA 49355 30 100.0 36 .............................. CCGCAATAACCAAACACACCAGCCATAAAAAGTAAA 49289 30 100.0 37 .............................. TTGTTCGGGGTTTGACCCAAAAACAAGGATATTTTTT 49222 30 100.0 36 .............................. ATATGATGGAAGCATGATGCAACTTGTGTGATGCAT 49156 30 100.0 36 .............................. TAGCTTTGCTGCTTTTTAAAGGCGTACCCCTTTATG 49090 30 100.0 36 .............................. GATTTTTACCCCAGGGACTGCATAAATGTCTCTATT 49024 30 100.0 37 .............................. TATTAGTTATAATAGTTGTGTATTAAGTTATAACAGA 48957 30 100.0 37 .............................. TATTAAACCACACTGAAGCATTTTTTGCCAAGCACGG 48890 30 100.0 37 .............................. TTTAATATTATTAAAACTGTCAAATTCCATATGATAC 48823 30 100.0 35 .............................. CCAGCCATGTAAGTAATACCAACACTGTTGTAATT 48758 30 100.0 36 .............................. CTGGAGGAAAGCAAAATATCACTATTATCAGTGAGC 48692 30 100.0 36 .............................. CACGATCGCGGTTGAATTTATCGAGTGGCTCATTCA 48626 30 100.0 36 .............................. TTAGCTCTAGCAGTTTCTTCTTGGTCTATTCTTGCA 48560 30 100.0 35 .............................. ATGATTAACGACAGTGAAAGCTGCCGTTTTTATTT 48495 30 100.0 38 .............................. CGTAACGATCATGGATATAATCCTTAATACCCATTAAC 48427 30 100.0 36 .............................. CTTAAAACCATTAAGAGTTGACAGCAAAAAAGCGCT 48361 30 100.0 36 .............................. TTTTGTGACTTCTTTTGCAATGTCTTGCGGGACATC 48295 30 100.0 36 .............................. CACGATGACAACGTCGATTCTATGGTATATGCACTA 48229 30 100.0 36 .............................. TAATAAACTAAAGTATGACAGAACAAATTGGTATTC 48163 30 100.0 34 .............................. GAAACTACTGAGTTGCCATCGCCAGGCCCCCACA 48099 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 48031 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 47965 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 98.1 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : GGAGAAACCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATTCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGAGGACTGGTAGTTGCAACT # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCTTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGATGACCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 54528-54106 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKBD01000007.1 Lactobacillus helveticus strain TMW 1610 seq7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 54527 30 100.0 35 .............................. CAAAGTATAGTTCATGGTGTCCAATTTGTGATTCA 54462 30 100.0 36 .............................. TCATCTGTAGCAATTCAATCAACGTTTTTCTTATTG 54396 30 100.0 35 .............................. AATTAGTATGTATGGTAGCAAATTTATAATGCTCG 54331 30 100.0 35 .............................. TCCAAAATCTGTACCAGTTCTCCAAATATAAACTA 54266 30 100.0 35 .............................. TTAAATACAAAAGAAAAGAAGCTATATCACCACCC 54201 30 100.0 36 .............................. AATTGTATTTCATAAGATGCTGCAATCTCACAACAT 54135 30 96.7 0 ....................G......... | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.5 36 GTTTTTATCTAACTTAAGAGAAATGTAAAT # Left flank : GTTTCCAAATCTAGGTCGACGAGAAGATTTGGTAAATTTTGAAGAAGTAAAAATCGTTGATGTAGAAAAAAAGGATGAAGACTTAACTGTAAATCATGGTGCGTATATACCAGTTGAAATGTCTGAAAATATCGGTCTTGAAAATGAAGGTATTGGATATAAAGGAACGCATTATTACTTAAATAAGGACTATAAACTGGTAACGATAAAAAAAGGTCAGACACAACGTCGATGGAATAAAGTTGAAGTTATATATGCTTCTGGGTTTACGGTTTATAAGAGTTACGTTGATGAAGATAATAATGTAGTGTTCTTAGTTTAAAATCTGTCGATGTCCAATAAGCAGTTTTTACCAGTAGATCGACAGATGTGATAAAGCCTTATGTAATAGTTTTTCTAGAGATTCCAATTAATTTAGACTCAAAATGATGATATGTTTTGGGAGGTCGATAGAAATCATATTACAAAGCATTGATGTATAAGACTTGGCAAGTGGAACT # Right flank : CGCTCTCTAATAGGGAGTTGTACATATCCTTTATTTAACTTACGAGAATATACGATATTAACCATAAAGATAGAAAGTGTGAAAGGATGAATGAATATTTAGCTAAATCTTTAGACCAATCTGAAGGAAATCATTGTGAGACGATCGTTGAACATACTAATAATTTGTTAAAGCAATATAGTTTATTAAAGCAAGCTTATCCAGATATATTTCAAAATTTTTGGCTTAGTCAAGATCGATTTAACGATATGACAAAACAGGTAGATATTCGTAGTAAAGACGATTGGCGGCTTTTAGAAATTGCTTGTAGCTATCACGACTTAGGAAAAATGAACCTACGCTTTCAGAAAAAGGTAAAAGCAGGGCAGAGCTTTTGTAAAGGTGAAATTCCGCATGCATTGTTAAGTATTACGATGCTTCCAATTGATGAATTACAGAAGCATTATACTAAAGATCAAATCATAGCATTAATTTTTGCAATAAAGTGGCACCATGAACGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //