Array 1 54057-54889 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOPJ01000002.1 Corynebacterium spheniscorum strain J11, PG 39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 54057 29 100.0 33 ............................. GGGAATACACCACCCTAAGAAAGGAACAGCGGC 54119 29 100.0 33 ............................. GGTGGACACCTCTACACCGGCGCGGTACATACA 54181 29 96.6 33 ............................G CCCCGGGGGTGAAAGCATGAATCACTAGAACTG 54243 29 96.6 34 ............................G CGGATGCCTGAGGTGATGGCCGCAGCGCAGACGC 54306 29 100.0 33 ............................. AGACATCCCTCATCGCGCGGTATCTCGTCTGGA 54368 29 100.0 33 ............................. GTCCGAGAGGCCGCGCTTGACGGGTACAAAATC 54430 29 96.6 33 ............................T AAGTGGTGCGTTGCTGTAGTCCGTTTGGCCCCC 54492 28 96.6 33 ........-.................... CGAACATTAACCAGATAGCGGAAGCGGTAGACG 54553 29 96.6 33 ............................T AAGTGGTGCGTTGCTGTAGTCCGTTTGGCCCCC 54615 28 96.6 33 ........-.................... CGAACATTAACCAGATAGCGGAAGCGGTAGACG 54676 29 96.6 33 ............................G AGGTGGTGGCCGCATATCAGGCGGAGCACCCCA 54738 29 96.6 32 ............................T GGCGTCGAGCCAGGCGGGGCGGGGTGACTTTT 54799 29 93.1 33 .......T....................G TGGCTCTGCACGCTGCCCCTTCCCCAACTTGAG 54861 29 86.2 0 ..............T....A.......TG | ========== ====== ====== ====== ============================= ================================== ================== 14 29 96.6 33 GTGTTCCCCGCGAAAGCGGGGATGATCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGGGGTTATGGCGTGGGCAATGCA # Right flank : GTAGAAGGCGTAGTTACCTAGCTCGCTAAGGGGATTGTTTCCTGCGAAAATGAACATGAATCGACATTATATTAGTTGTATTGAGAATTGTTGTAGAAAATATCTTAACTAAACGTTATAGATAGTATTTAACATCTTTATGGGATAATGAATAAGCTCGCGCTATAGCTGAAATGATTCTTACCGATGCCTTTGAGTGGGACCGGTTCCAATCAGCATTTGAATAGCTGTGTTGGCTCCATAGCATGCCGGCGATGTATGGATGCGAGCTGCTGAAATACCTTGTACAGTAGTCCGCGGACGGATTATAAACTACGGTTTTTCCCCGCGTGAGTGAGGATGATCCATTGATGATTATGATCCATCCGGTGTTCCCCACGCGAGTGGGGATGATCCTCCTTCTGGATAGCCTCGACCGCTTTTAACCCCCGATGTTCCCCGCGCGAATGAGGTTTGAAAACAGGATTGCGCTGAAGCACAGGCCCGCCTTCGCTGGCCTC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAAAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3072-4276 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOPJ01000012.1 Corynebacterium spheniscorum strain J11, PG 39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3072 29 100.0 33 ............................. AGAAGGTGGTGGAAGCTAGGGCACGTAGGGACG 3134 29 100.0 32 ............................. ATAGTAGCTTTATTTTCGCCACTGAAAATTTG 3195 29 96.6 34 ............................A GGGCGAGCCTAACTCGATGTGGAAACAGTACGGG 3258 29 96.6 33 ............................G CAACCGGTATTGTCACTATCACTGCACCTGCGG 3320 29 96.6 33 ............................T CCGGGGAATCAGGTTATCGACGTCTTGCCACGG 3382 29 100.0 33 ............................. ACCCATGGTTGGACACCGAACGTTACCCGCTGA 3444 29 96.6 33 ............................G GTCAAAATCACCGACGAAGCGGTGAAAACGAAT 3506 29 100.0 33 ............................. ATGCGGTCCACACATTCGTCGACAGCGGTCACA 3568 29 96.6 33 ............................T CGAAACAAAGCTAAAACTGTTGTATGAAGAGGG 3630 29 96.6 33 ............................G CGATCATGGTCCCGGAGTGGACTCGGGCGGTTG 3692 29 100.0 32 ............................. GAGGGCATTAGCGCGGGTTTGCAGGCGGCCGG 3754 29 96.6 33 ............................A GCGTCGTGCATAGGACAGAGCATAGCGCGTTAT 3816 29 96.6 33 ............................G AGTTTGGTGAGTGGGTTAAGCGCAACTCTGAGT 3878 29 100.0 33 ............................. AGTCACCAGCTCACGGTGGCAGCGCACCTCCAG 3940 29 100.0 33 ............................. CCGAGGTTTGATACCTAACCCGAGGTTTGGTTT 4002 29 96.6 32 ............................G CAAGCTATCGAAAAGGTTGAAAAGCAAACAGG 4064 29 96.6 33 ............................G GACACCCCACCAAAACGGCCCGCTATATTGCTT 4126 29 96.6 31 ............................A GGCCCTTTGGATACCCCCGGGCCGCGTTGCT 4186 29 93.1 33 .A..........................T GCGCACATCTCACGGGTGAGGTCAGCGCAGGTG 4248 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 20 29 97.8 33 GTGTTCCCCGCGTGAGTGGGGATGATCCC # Left flank : ACCGAGCCGGGCGACTACAAGCTGAAGATCACCATCTTCCCGCCGTCGAACTACGATATCCACTCCGACTACATCACCGGCGTGCCGGCTGATGCTTGGTTCAAGCCTTTGACCCAGGAAATGGATTGGAAGATCGAGCAGGAGAACCTTGACGCAGTCAAGGAGAACACTGTCGACAATCCGATGGAGCCGGGCGACAACTGCAAGAAGTACCCCAAGAAGATGTACGAAAACAAGGAAGCTGCAAAGACCCTTGAAGAGGCTGAGAAGAACGAGCCCCTTAAGAAGTAATCACTTCTGACTGACTGGCCGGGACCCGCTATCCTTTCGAGGATTCGGGACCCGGTCTTTCGCTGTGTCAGGGGTGCTCGGCTGGTGTGTCGATGGCCTCTTGAGGGTCGGCTGGACAGTGAATCTAGGCCCGTTTCCGAGGGACCATCGGTGTGCACAAGTTAAAGCTATAATCGACCCGTGAGAACTAAATAGCGAGGTCAGTTAGT # Right flank : CAGTCGAAGCATCCGCCAACTTAGCCGCCGCCTCGTGTTCCCCGCGTGAGTGGGGATGATCCGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGTGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5404-7105 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOPJ01000012.1 Corynebacterium spheniscorum strain J11, PG 39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5404 29 100.0 33 ............................. AACTTAGGGCTATGCAGTCGGTTGGCGCTTCGG 5466 29 100.0 33 ............................. GTGCAGTTCCCCGGTCATTTCATCGAAGCCTGC 5528 29 96.6 33 ............................T TATTAAACCCACCTGGGACGCGCTTGGCCAGGG 5590 29 96.6 33 ............................C AACCCCAGGCGCGTATCCGCCCACGTACCGTCC 5652 29 96.6 33 ............................C GAATTTCATCTGCTTGCCACGGTTTTTCCATGA 5714 29 96.6 33 ............................C CCTTGCGGCGTGTAGTCTTTAGGGTCTGGTGTT 5776 29 100.0 33 ............................. AACACCGACTCATCAACCTTCACGGTCGGATCA 5838 29 100.0 33 ............................. ACGTGCTCTACACCATCCTCGAGGAACAGAGCG 5900 29 96.6 33 ............................C ACTGGCAGCGCAACCGAATGGACGTGCGACAAA 5962 29 100.0 33 ............................. TTCGGAGTGCTTCGACATGACGACTTCGTCCGC 6024 29 96.6 33 ..................A.......... CGAACCGGGGGCACCGCGCACCCCGGCAGCTGA 6086 29 100.0 33 ............................. GCCCGCCACGACGGAGTTATCGAAGTGATCGCC 6148 29 96.6 33 ............................T GCGCTGCCATAATCAAGCAAAACGCTAATAAGA 6210 29 96.6 33 ..............G.............. TACACGCTCGATGCGATTATGGGTGAGTTCATT 6272 29 100.0 33 ............................. TACTCATTGACAGGTACGGCGATAGGCACGGCC 6334 29 96.6 32 ............................C ACGATTGACACAGGTCAACGCGCCGTTTGGGT 6395 29 100.0 33 ............................. CGTCCGCAACTACCGGCTCTAGCCGCCCGGGGT 6457 29 96.6 33 ............................C CCATTTCGATGCCGAGCACCCAAATGCGTAACC 6519 29 100.0 33 ............................. AACGCCGACGATGGCCGCCACATCATCTGGGAC 6581 29 96.6 33 ............................T ACGGAATACGATTTAGCCACTTTTCAGGTAGAT 6643 29 100.0 33 ............................. GCCGCGAGTGCTACCGCGGGGTCCTGGGTTTTG 6705 29 100.0 33 ............................. CCGACATCACTGACCTGGAAACTATTGAGTATG 6767 29 96.6 33 ............................C GTCCGCCATCACCGCAGCGACAGCCTGGAAAAC 6829 29 93.1 33 ......T.....................C CACACCCCGATGCACCCATAGTGCAGGACTACC 6891 29 100.0 33 ............................. AGCAGGTACCCCTCCGAAGAATCGAGACATCCA 6953 29 96.6 33 ............................C GGACGATCCCGCCAGCCACCCTCCGCACACGGC 7015 29 100.0 33 ............................. CCCATCTGGGACGCGCTGGCCACGGCTGCGAAT 7077 29 72.4 0 ............AA..C....T.TT..TT | ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.2 33 GTGTTCCCCGCGTGAGTGGGGATGATCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG # Right flank : TTTATGTCACTCAGGTACTCTCGCAACCCCTGCATTCGAACTGGTTTAAACGTCAACGCCGACTGTATGGACTCGCCTCAAGAGCCCCAGTACCAGTCGGCACCCCTGCTCAACCGCGTGCGCTTAGCTTTATGAAGAACTCATTTATGGCCTGCGTTGAAGTGCAGCTGCTCTCAAATGCGAGCATTCTCGACTTCCTATTTCTGGCGGTGGTTTCCCCCTTATTGCCTATCTCCGCATTCCTGGTCTCATTTCTCAGTGGCCGGGAAAATAATCGCTTGACTATTTGGTGTTCAGTGTTCTTCTAGTTGCTGCTAAAGTGTTAGCTAGTTGCTAAAAACTATGGTCGAACATGCAGGTAGTGGCATGGGGAGAGGTGGTTGTGGTGTCGGTATTCATTGTGGTTGTTTTGTTGATGGCGCTGGCGGTGTATCTGGCTCGTCGTACCGATAAACCGATCGTGCGTTACTTCTTGCTATTCATTGCTTTGCCGCTGGCGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGTGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //