Array 1 1261004-1258718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047412.1 Ligilactobacillus salivarius strain 2D chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1261003 29 100.0 32 ............................. TTGGAGTGATATTACTTGAAGTCAAATTGCTT 1260942 29 100.0 32 ............................. ATTGGTACATATCCGTTGCAACAACAATTCAA 1260881 29 100.0 32 ............................. GGTAGGTTCCATCGAATCACCGACAACTGGAA 1260820 29 100.0 32 ............................. GAACAAGCATATCTAAAATTACTTATGGATGA 1260759 29 100.0 32 ............................. TGTTAAAGTATTTGATGCTTTGGGAAAAGAAA 1260698 29 100.0 32 ............................. GATACAGTAGATAACGGACCTATTGATTTAGA 1260637 29 100.0 32 ............................. CGACTGTTGTATACCAGTTTCAGTAAGTTTAA 1260576 29 100.0 32 ............................. AGTTTCGATTTCACTAGGTGAGATACCGTCAA 1260515 29 100.0 32 ............................. CTGCTGTGGATCTAACCACGTTCCATCATTGG 1260454 29 100.0 32 ............................. AAGCAACTTAAAGCTGCTGCAAATGACGAGCA 1260393 29 100.0 32 ............................. TTGTGCTGTTGTAACTGTGATGATATTAGACT 1260332 29 100.0 32 ............................. TTAATGTTTTAAATGAAATTAATATGATTAAA 1260271 29 100.0 32 ............................. CTTATCCCATGTTATCAGTGAGATAATCTTTA 1260210 29 100.0 32 ............................. AACTTGATGTAGTCCTGGGTGTCTCCAACACG 1260149 29 96.6 32 ............................C AAGGTAGTTCTGGTCCAGTAGCTAGACCAATG 1260088 29 100.0 32 ............................. GATAATTCATCAGTAGAACTAAAGATATTAAA 1260027 29 100.0 32 ............................. ATTATATTTCATTCATATCACGTCCAACTTAA 1259966 29 100.0 32 ............................. GAACAAGCATATCTAAAATTACTTATGGATGA 1259905 29 100.0 32 ............................. TGTTAAAGTATTTGATGCTTTGGGAAAAGAAA 1259844 29 100.0 32 ............................. GATACAGTAGATAACGGACCTATTGATTTAGA 1259783 29 100.0 32 ............................. CGACTGTTGTATACCAGTTTCAGTAAGTTTAA 1259722 29 100.0 32 ............................. CTGCTGTGGATCTAACCACGTTCCATCATTGG 1259661 29 100.0 32 ............................. AAGCAACTTAAAGCTGCTGCAAATGACGAGCA 1259600 29 100.0 32 ............................. TTGTGCTGTTGTAACTGTGATGATATTAGACT 1259539 29 100.0 32 ............................. TTAATGTTTTAAATGAAATTAATATGATTAAA 1259478 29 100.0 32 ............................. CTTATCCCATGTTATCAGTGAGATAATCTTTA 1259417 29 100.0 32 ............................. AACTTGATGTAGTCCTGGGTGTCTCCAACACG 1259356 29 96.6 32 ............................C AAGGTAGTTCTGGTCCAGTAGCTAGACCAATG 1259295 29 100.0 32 ............................. GATAATTCATCAGTAGAACTAAAGATATTAAA 1259234 29 100.0 32 ............................. ATTATATTTCATTCATATCACGTCCAACTTAA 1259173 29 100.0 32 ............................. AACAATGAAATGAATTTTATTTGATTTGCATT 1259112 29 100.0 32 ............................. AATATACCCCCACTATTTCAAATCATTACGTG 1259051 29 100.0 32 ............................. ATTATAACCATTAGGTATTGTGATTGTACCTT 1258990 29 100.0 32 ............................. ATATCACGTTCATACATCATACCGCTTGGCGT G [1258973] 1258928 29 100.0 32 ............................. AATCAACACGTTTTCCGTTTTTGCTAGTTCCG 1258867 29 96.6 32 ............................A TTGATGTGGTTGTTCTGGTATTTTCCCATCAA 1258806 29 100.0 32 ............................. TTTGAAGATGGCACAGCTTATTTAGCAGTTGC 1258745 28 86.2 0 ........T.......C....-.....A. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.4 32 GTGTTCCCCATGTATGTGGGGGTGATCCT # Left flank : TTAGAGAAAGATAGTATTATATCAATAGGTGCCGTTAAAGTAGAAAATAATAGCAAGCATGACTATTATTCTCTTATTAAAGGTATAGAAGAAATTCCAGATGAAATCAGTGAGTTAACTGGTATAGGAATTGATGAATTGAATAAAGATGGTGAAGATATATATAAAGTTTTAAAAGTATTGTATGGGGTTTTAGATGATGCTATTATTATTGGGTATAATCTTAATTTTGATCTTAATTTTCTTAATAGAGAATATGAGCAATATACTGAACTTAAGTTAGTAAATAAGGTGATTGATTTACTCCCAATAGTAAAAAAACAGTGTCGTTTTTTAGATAATTATCGCTTAGAAACGGTATTGCAATATTTTGGTATAGAAAATTCTCATCCACATAATGCATTGGAAGATGCTAAGGCTTGTATTGAATTGTATGAGAAACTAATAAAAAACAAATAGTAGTAACTTCAAAAAGATCGATTTAATAGGGATATTTTACT # Right flank : TTAGAAAAATTAAAGAAGTAAGGTCTTAAGTTATATTTCTAAAGTACTTTATAATATAGATTATAATATCCTCTGAGTATACAGATGAAATAGAAAATGACTCTGATGCTCAGGGGGTATTTCTATGGAAAAAAATCTAAATATTCAGTTGAAGGAAAACTATCAATACTTAATGAAACTTCACATATCGGAATTTTTGAAGTAACAATTAAGTATGGAATCGATTATAAAACTATTGGACGATGGAGACTGCTTTATCAGTATCAAGATCTTTAACCAAGTAATAGAAATCAGAATTATTCTAAGGAATTCAAGTATTTATTAGTTGAGCAATACAAACATTTAAACGAACCCGCGAAACTATTTGCGATAAAAAAGGTCTACGTTCAGTAATTCAGTTTAGGCAATGGATTATCTGATCCGGTATAATGAATCTAACTTAAGGACCAAGGACCCAGAAAGAGAGATTCAAAAAAAGAGTGGACGAAAGACTAGTTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //