Array 1 35892-36850 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLFK01000004.1 Actinobacillus seminis strain ATCC 15768 Aseminis45422contigNo4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35892 36 97.2 30 A................................... TATGTAATGTGTTGTAACGTAATAAAAAAG 35958 36 100.0 30 .................................... TCTAAGCCCTGTTTCAAGTCAAAGGCAAGT 36024 36 100.0 30 .................................... TAGGGTATTCACGACCAACCATTGCCCAAG 36090 36 100.0 30 .................................... TGAAGATACAGGTTATAAGCGAATAGGTTT 36156 36 100.0 30 .................................... GGATTAAGGCGGGAGGAATCGATTAAGTTT 36222 36 100.0 30 .................................... GCTTACCAAGCGTTTTAATGTATGGTGCAA 36288 36 97.2 30 ................................T... AAAGGAGATTTAACTATGGATAAAGAAAAA 36354 36 100.0 30 .................................... TTGACTGCATTTTCAAAAGACTCGTAAGCA 36420 36 100.0 30 .................................... GCAAACTACGTCTTGCCGACACTTTCGTGG 36486 36 100.0 30 .................................... AAGATGGGTATATTATTCACCAGACACTGC 36552 36 100.0 30 .................................... TCTAAACAAATAATCATTTCTCACCTCGCA 36618 36 100.0 30 .................................... GACATTAGCTGGCTTTTGCGTGGTAATGGC 36684 36 100.0 29 .................................... CTCCCCCGCCCGCTCTATCTGTTTGTTTT 36749 36 100.0 30 .................................... TTTCACGATTAGCATATAAGTGCGCAATGT 36815 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.6 30 GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CGGGTTAAGTTTCTGGAGAAAGATGAGGAAAAGGCTGAGTAATCAGCCTCAGACCGCTGACAACCCCCACTATTTTTACAATCAATAAAAAATAGTGGAGTTGTTTTGTATTTGATGGCTTGTAAACTAATATTCTTGCCCTACTAATTTTAGAACGCTCATTCCAAGTATTCGGCGATATACCTCAATATATTCCCTTATCCAAGCCATAAAACAATATAAAATAGCTCGGATAACAAGGGCTATCTTCTTGATATTTTGGGCAGAACTACGTTCTACGGTTTCTTTGCCTCTTGCATAAATCACTTTTCCTTTTTCGCTTAGCCTTACTTCATTGGCTCTATCGACGCTTGCTTGATAAATATGGCGTGTAATGAGTTTTTGACCGGATTGGCTTTGACTACAAGGTTGTCCGGCCGGGCAATTAACACAAACCGCTTTATTCGACACATAACAGTGATAACCCTTTCGTGTCGTTGTTTGGTAAATAAGCGTTTCGC # Right flank : TTCCGATGCGCTGGTGCCTTATTATTCAAGGCGCCAGCGCATTTTTGTTAGTAAAAAAATCGAGGAAATTATTTCAAAATATGCCTTTTTCGTGAAATATTTAGCAAAAAGTGCGGTTAAAATTTGAAAAGATTTGTGTAAAAAAAGAAGTTTTTGCTGAAATTTAGTAAAAATTTCTGTCTATAAAATAGTTAATCAAATCATGTGAGCGGTTAAATTTTGCTCAAAATAAATGAGGCATAAATTGTAACAAATACTATTTTTATCGCTAAAAAAGTAGCATTTGATTGGCATTTACTTTCTTCTCTTGAATTTTTAACTCGCCTAACAAAATCGTCATACCGGCAAATTGCTTTTCCGTTACTTCAAGACAACGGATGGCGCCCTCTTCAGGTAAATGTTCACATAAACGTTTGTGGTGTTTTTCCAGCGAATCTCGCCCTCGAACAATACGGGCATACACCGAAAGTTGTAACATTTGATAGCCATCTTTAAGCAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //