Array 1 570-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259473.1 Prevotella disiens JCM 6334 = ATCC 29426 Scaffold717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================= ================== 569 48 100.0 29 ................................................ CCACTCTATATCCACTGTGATTTACTTTT 492 48 100.0 29 ................................................ TTAATCATTGTAAGTCCTTGAAATGGTAA 415 48 100.0 29 ................................................ ACGCGTGTTTTCCATCTCCAAAGTAAAAA 338 48 100.0 29 ................................................ TAACGTTGTACATTCATTCCATGAGTTCG 261 48 100.0 29 ................................................ AATTAAAAGCGTTGAAAGAGCAACAAGAC 184 48 100.0 29 ................................................ TCACGTGCTTGTAACAAAAACTTTCCTTC 107 48 97.9 0 T............................................... | ========== ====== ====== ====== ================================================ ============================= ================== 7 48 99.7 29 AGATGGTTTTGCTAATGCAAAGATACTAATTTTAAAGCAAATCACAAC # Left flank : AAAGATACTAATTTTAAAGCAAATCACAACGAGTTTTTTGCATTATAATTTATAAAAA # Right flank : CATATAAGTTATTCGCTTGCATCGCTCGCCCGATGGTTTTGCTAATGCAAAGATACTAAT # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGATGGTTTTGCTAATGCAAAGATACTAATTTTAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 985-1186 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259295.1 Prevotella disiens JCM 6334 = ATCC 29426 Scaffold1321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 985 47 100.0 31 ............................................... TTATTCCGGCTATTGGTTTGGCGCGTTTCAA 1063 47 100.0 30 ............................................... TTTTTTACTTTGGAGATGGAAAACACGCGT 1140 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 3 47 100.0 31 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Left flank : CGGGGAGGAACGGCGCAATCTTTTTCCGTAACCTGATTTTTCGCATGAGTTATGGATAACTCACTATTCCTTAGAGCCTTGTTTCGCTATTCGTACCCGTTTGTCGCATTTTCGGGCATGGTTACGAACAAGTAACGTAGCGGCGTCAGGATTTGGCTTCGGCAGGGATTGTAATGGCTTCACGGATTATCGCCACTTCAACCAAAACCCTTGTAACTCAATTCTATCACTATATCTTTCCGCATTTCACTTTTTTGTAGTAACTTTGCAGACACAAAACCATCCTTACACTCATTATATAACCTGCCTACCCAGTTGTGATTTGCTTTAAAATTAGTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTATCTTTGCATTAGCAAAACCATCCTATATCCGCAACGGCAAAAGGAGGTCTAA # Right flank : GCTTGCCACGTTCGAGTTCTGCGTGTATGTGTTGTGATTTGCTTTAAAATTAGTATCTTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 59-336 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259264.1 Prevotella disiens JCM 6334 = ATCC 29426 Scaffold1012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 59 47 100.0 30 ............................................... AGAAAGGTACAGCTTATGTATAAGGAGCTA 136 47 100.0 30 ............................................... TAAAAGTAAATCACAGTGGATATAGAGTGG 213 47 100.0 30 ............................................... TAAAGGCATTTATAGGTTTATCGTCAGGGT 290 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Left flank : TTAGTATCTTTGCATTAGCAAAACCATCTGCGAGGATTGTCAGTGTTTTGTCGGAGGCG # Right flank : CAGAAATTCGCAGCTAACCTTACCGACTGCAGTTGTGATTTGCTTTAAAATTAGTATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGTATCTTTGCATTAGCAAAACCATCTTAAGCGGGGGTAATAACCACACTCTTTCCGTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATCATAAGCAATATCCTTGAAACGCACAAGTAAGTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATCTGCATCAAATTCTGTTGTTGCTTCATCATGTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATCTTCATCGCATCGAGTGGAACTCCAGCTTGAGTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATCTAAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 555-908 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259264.1 Prevotella disiens JCM 6334 = ATCC 29426 Scaffold1012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 555 47 100.0 30 ............................................... ATAAGCAATATCCTTGAAACGCACAAGTAA 632 47 100.0 29 ............................................... TGCATCAAATTCTGTTGTTGCTTCATCAT 708 47 100.0 30 ............................................... TTCATCGCATCGAGTGGAACTCCAGCTTGA 785 47 100.0 30 ............................................... TAAAAGTAAATCACAGTGGATATAGAGTGG 862 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 100.0 30 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Left flank : AGGCGTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATCAGAAAGGTACAGCTTATGTATAAGGAGCTAGTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATCTAAAAGTAAATCACAGTGGATATAGAGTGGGTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATCTAAAGGCATTTATAGGTTTATCGTCAGGGTGTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATCAGAAATTCGCAGCTAACCTTACCGACTGCAGTTGTGATTTGCTTTAAAATTAGTATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGTATCTTTGCATTAGCAAAACCATCTTAAGCGGGGGTAATAACCACACTCTTTCC # Right flank : AGAGGTGCTAGTCGCTGTGAAGGTTTCCCGGTTGTGATTTGCTTTAAAATTAGTATCTTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 5086-4787 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259332.1 Prevotella disiens JCM 6334 = ATCC 29426 Scaffold1688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5085 36 83.3 29 NNNNNN.............................. CTCGATATTGAGCCAATTATTTTCTGTTA 5020 36 100.0 30 .................................... CTATAATCCACAACACGGTAAAGTTCAATA 4954 36 100.0 30 .................................... ATGAAGTGGCGCAACAAGGTAATGAAGTAC 4888 36 100.0 30 .................................... TAAAATAGGTATGATAACAATATTAGGGAC 4822 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 93.3 30 GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Left flank : GTAGAATGCGCAAAAGAAATAACCATTCCGTATGCTAATGTGAGGGCTGCTCCGTTGTGATTTGATGTAGAATGCGCAAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGATGTAGAATGCGCAAAAGAAATAACCGGAACAGTATATAAAGGTGGCAAAGATATGTTGTGATTTGATGTAGAATGCGCAAAAGAAATAACAAATTTCAATATATGAGCAATAAAGAAAATGTTGTGATTTGATGTAGAATGCGCAAAAGAAATAACAGTTCAACGATGCCAGCCTATTTGTTACTTGTTGTGATTTGATGTAGAATGCGCAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGATGTAGAATGCGCAAAAGAAATAACCCTTGAACTTGACGGACTCAGCGCAATATCGTTGTGATTTGATGTAGAATGCGCAAAAGAAATAACGGAAGATTGAGAGGAAGTATCATATTCACGGTTGTGATTTGATGTAGAATGCGCAAAAGAAATAACGGGCGGTAAATAAGCATACAATAATCGCAAGTTGTGATTTGATGTAGAATGCGCAAAAGAAATAACTTATTTTTTACAACTTTTTTGGGTGCAGTGTTGTGATTTGATGTAGAATGCGCAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGATGTAGAATGCGCAAA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 6185-5886 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259332.1 Prevotella disiens JCM 6334 = ATCC 29426 Scaffold1688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6184 36 100.0 30 .................................... TTGCATGGTTCATGGACATACACACAATAA 6118 36 100.0 29 .................................... TTAAATAAATTTATTATGACTTACGACAA 6053 36 100.0 30 .................................... TTTTTACTTCTCCGCTTCTTCTTCCGTAAT 5987 36 100.0 30 .................................... GTCGTAGCGTTTCTCCTTTAATTCAAGCTC 5921 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Left flank : AGAAATATCATTAATATAACGCTTATGCCCAAATACTGATTATTGTTCAAAAATTTGCAAAGATAGAGAAATGAGTGAATTTAGATTAAATGCTTACCATATTATGTGGCTATTTATTATGTTCGATTTGCCCACGATTACAACAAAGGATAAAAAAGAATCTGCTCGATTTAGAAAAGATTTAGAAAAAGATGGCTTTACAATGCATCAGTTTAGTATCTATGTTCGGTATTGTGCATCGTTAGAAATAGCCAAAGTGCATATAAAACGAGTAAAATCACTTGTACCTTTAGCAGGAAAAGTTAGCATACTAATGGTAACTGATAAACAATATTCTAAAATGATAAATATTTGGGGAGGAATAAAGAAAAAATCTCCTTCAACACCTGTACAGTTAGAACTTTTTTAGTAAATTTGCAGTTAAAAGATTATATCAAGTTCACTTCATATAACATAAAAATATTATAACTCGTTGTAAAACAGTTTGCTATGCAATGTAT # Right flank : CGACTCGGCTAAATCGCCTGCTTTGTCAGCGTTGTGATTTGATGTAGAATGCGCAAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGATGTAGAATGCGCAAAAGAAATAACAACACATCAATATTACCGTCTATTGATGTAGTTGTGATTTGATGTAGAATGCGCAAAAGAAATAACTCGTTCTTCTTACATTGTCAGAACGTTGTTGTTGTGATTTGATGTAGAATGCGCAAAAGAAATAACCATTCCGTATGCTAATGTGAGGGCTGCTCCGTTGTGATTTGATGTAGAATGCGCAAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTGATGTAGAATGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //