Array 1 1012475-1014090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034787.1 Escherichia coli strain ECCNB20-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1012475 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 1012536 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 1012597 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 1012658 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 1012719 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 1012780 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 1012841 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 1012902 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 1012963 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 1013024 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 1013085 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 1013146 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 1013207 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1013268 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 1013329 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 1013390 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1013452 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 1013513 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 1013574 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 1013635 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 1013696 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 1013757 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 1013818 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 1013879 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 1013940 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 1014001 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1014062 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1041086-1042334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034787.1 Escherichia coli strain ECCNB20-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1041086 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 1041147 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 1041208 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 1041269 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 1041330 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 1041391 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 1041452 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 1041513 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1041574 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 1041635 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 1041696 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 1041757 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 1041818 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 1041879 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 1041940 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 1042001 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 1042062 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 1042123 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 1042184 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 1042245 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1042306 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //