Array 1 126548-125176 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDI01000009.1 Escherichia coli strain 52-J58-A entry9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126547 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 126486 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 126425 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 126364 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 126303 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 126242 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 126181 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 126120 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 126059 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 125998 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 125937 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 125876 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 125815 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 125753 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 125692 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 125631 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 125570 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 125509 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 125448 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 125387 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 125326 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 125265 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 125204 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153007-152246 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDI01000009.1 Escherichia coli strain 52-J58-A entry9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 153006 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 152945 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 152884 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 152823 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 152762 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 152701 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 152640 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 152579 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 152518 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 152457 29 100.0 32 ............................. TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 152396 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 152335 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 152274 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //