Array 1 8950-10139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHLJ010000027.1 Escherichia coli strain S040 contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8950 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 9011 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 9072 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 9133 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 9194 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 9255 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 9316 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 9377 29 96.6 32 ......A...................... CAAAATTTAAAATCATTTAAGCTTGTAAAACC 9438 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 9499 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 9560 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 9621 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 9682 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 9744 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 9805 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 9866 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 9927 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 9988 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 10050 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 10111 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 544634-545638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHLJ010000001.1 Escherichia coli strain S040 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 544634 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 544695 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 544756 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 544817 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 544878 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 544939 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 545000 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 545061 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 545122 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 545183 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 545244 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 545305 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 545366 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 545427 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 545488 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 545549 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 545610 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACGGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //