Array 1 948009-949501 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023291.1 Salmonella enterica subsp. enterica serovar Typhimurium strain L-4126 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948009 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948070 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948131 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948192 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 948253 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 948314 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948375 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948436 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948497 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948558 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948619 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948680 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948741 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948802 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948863 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 948924 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 948986 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949047 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949108 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949169 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949230 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949291 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949352 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949413 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949474 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965633-967597 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023291.1 Salmonella enterica subsp. enterica serovar Typhimurium strain L-4126 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 965633 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965694 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965755 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965816 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965877 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 965938 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 965999 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966061 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966122 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 966183 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 966244 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966305 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966366 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966427 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966488 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966549 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966610 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966671 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966732 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966793 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966854 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 966916 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 966977 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [967019] 967019 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967080 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967141 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967202 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 967263 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 967324 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 967385 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967446 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967507 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967568 29 96.6 0 A............................ | A [967594] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //