Array 1 186639-185129 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHS01000004.1 Listeria monocytogenes strain FSL L7-0683 NODE_4_length_476093_cov_60.160646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 186638 29 100.0 34 ............................. AAAATTATTCGAGGTTGCTGTTATTTTCATTTAT 186575 29 100.0 37 ............................. TTCTGTTTGGAAGTAGCTGTGTCGGCAGCCCAAGTCC 186509 29 100.0 35 ............................. GCAATCAAATCTTTAGAAATGTATAATTTACTTGA 186445 29 100.0 34 ............................. AAGACATCGCTTCTATTACTTTCGTCCCTGCATC 186382 29 100.0 34 ............................. GAACTTTTCCGCGAATGTTGTTGATCGATTCATT 186319 29 100.0 36 ............................. AGCTCATTACGACGTAATAAGATATAACCAAATAAT 186254 29 100.0 34 ............................. ATACTTCAAATTCGTTTCTTAATATCGAAATTTG 186191 29 100.0 36 ............................. ATAATCACTGGATGTTTCAAAGCTGCTCCGGTTCCT 186126 29 100.0 36 ............................. AGGCTTTTTCAATCGTTATTTCTGTTCCTTTTTTGC 186061 29 100.0 36 ............................. GTGAAAATTAAATCCGCGAAAGATTTACGGATTCCG 185996 29 100.0 36 ............................. ACGTTTCGATTTTTCGTAAAAGTCTTCCTGTTTTTC 185931 29 100.0 35 ............................. TAACATGGAGCCACGGCAAACCTACCACTGCCGAA 185867 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 185802 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 185738 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 185673 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 185610 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 185545 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 185479 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 185414 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 185350 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 185287 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 185224 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 185158 29 93.1 0 .......................C....C | A [185133] ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.6 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 204404-203475 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHS01000004.1 Listeria monocytogenes strain FSL L7-0683 NODE_4_length_476093_cov_60.160646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 204403 29 100.0 37 ............................. AATAGCCACATCACTCGCGGAATCAATGAAAAATAGC 204337 29 100.0 36 ............................. ACGGCACTAATGCTCTTACCAGTATTTTGCATTTTC 204272 29 100.0 36 ............................. TCCTTTTGATTAGCGGGTTAGAGAATTTTGCATGAC 204207 29 100.0 34 ............................. TTAGATGAATCAGGAAAAGAAGTATCTATTACAA 204144 29 100.0 35 ............................. TTATTAGCCTCCTCCTTCTCTCTCTCCCATTCGTC 204080 29 100.0 35 ............................. AGTTTTTCTGTTCAGGTCCAATGTTGCGTTTATTT 204016 29 100.0 37 ............................. CCCCTTTCCAGACGCAAAAGAGCTTTTTAAGCTTCTT 203950 29 100.0 35 ............................. CAATGAACACGCGTTCTCTGTTTTGTGGAACTCCG 203886 29 100.0 34 ............................. GACGACCTTTGTTCTCATATGTCTCAATAGCCTC 203823 29 100.0 34 ............................. TGCGCAGTTTACGCTAACATTTGAAGTTTTTAAA 203760 29 100.0 36 ............................. ATCGCTTTTATATTTTTTGAACTTCGGCACCCACTC 203695 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATCCTCCTG 203632 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 203567 29 96.6 35 ..............T.............. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 203503 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 98.2 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTTGGGAAATCTTCAGGATAAGGCGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCAACATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATTGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //