Array 1 64670-63482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCGV010000053.1 Escherichia coli strain GCPRC69C Contig_53_98.8512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64669 29 100.0 32 ............................. ATCGAGCAGGGAATTATTTCTGATACCGGGGA 64608 29 100.0 32 ............................. GTTGAAGCCTTTGGTTGTAAATTTTTGATCGA 64547 29 100.0 32 ............................. ATGTCCGCGATCTGATCGGGTAATTTATGCTA 64486 29 100.0 32 ............................. GAGCTTACTTTCCTCCGGCGCTTTAAAAGCGA 64425 29 100.0 32 ............................. GCTGGCTGATTCAGCGTGACGGGGCGAAATAT 64364 29 100.0 32 ............................. ATCCCGAGGACTTTTATGTCGACGCGGAGCCG 64303 29 100.0 32 ............................. TCAGCGGCGTGATCCCGTTTCGTAATGTTGAA 64242 29 100.0 32 ............................. CCGCCCCCATATGGGCTAAAGGGGGCGGCAGG 64181 29 100.0 32 ............................. ACAGCGACGACAACGCACCGTTTAACGTGTCA 64120 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 64059 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 63998 29 100.0 32 ............................. CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 63937 29 100.0 32 ............................. CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 63876 29 100.0 32 ............................. GTGATGAGGAAAAGCTAATAGAATGGCGACGC 63815 29 100.0 32 ............................. GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 63754 29 100.0 32 ............................. TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 63693 29 100.0 32 ............................. GCATTTTCGATATCAAACTTTCTGCGCTCCAG 63632 29 100.0 32 ............................. CAGAGCTGGGATCGGGAAAAACAATTTAATGA 63571 29 100.0 32 ............................. CCAGTCGAAGATCTGGACGCGTGGGGAAAAGC 63510 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCTCTCCGCGCTTACGTGGACGGCTCGAGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90889-90372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCGV010000053.1 Escherichia coli strain GCPRC69C Contig_53_98.8512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90888 29 100.0 32 ............................. GTTATTTAACGCCGTTGTGTTCCAGACTGAAA 90827 29 100.0 32 ............................. AAAATAACCAGTCGGTTTTATATTGGGTCCTA 90766 29 100.0 32 ............................. CTTGCGCCGAATAATCAGAAGCACTATCAGCC 90705 29 100.0 32 ............................. ATGTGCGTACATTTATCACTCCTGTCGTGTTC 90644 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 90583 29 100.0 32 ............................. CAGCTGACAAAAAATATTTGCAGATAAGTAAA 90522 29 100.0 32 ............................. GCACAAAAAAACCCGCGCGAGGCGGGCTAATT 90461 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 90400 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTATCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGACAAGTTCACAATTATCGATACAAAAAATAAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAATACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //