Array 1 40965-38922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWOR010000014.1 Ralstonia solanacearum strain PD:3222 IPO4018-2017_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40964 29 100.0 32 ............................. CCTTTCGTTCTGGTCGGCAAGCGCGGCTTCAT 40903 29 100.0 32 ............................. GCCATCCGTTCAACGCTGGTGAAGATGGGCGC 40842 29 100.0 32 ............................. AACGTGGCGACCGTGATCCGCCAGAACGGCTA 40781 29 100.0 32 ............................. CGCGGACGCCTTGCATCGCTCAGTCGAGCGAT 40720 29 100.0 32 ............................. CATGCTCACCGATGCCCAACTGACCGATGTCC 40659 29 96.6 31 ..........................G.. ATGCGGTGCCACTCGGTGGCTTCCTTCATCC G [40632] 40598 29 100.0 32 ............................. TGGCCGTCATTTCTTGATGTGCAGAGGAATTG 40537 29 100.0 32 ............................. CATCGCCGACGTCTCTGACCATGTCGACTGGG 40476 29 100.0 32 ............................. GCCTGGCAGAAGCTGGCGCCGAGCACTGAGTT 40415 29 100.0 32 ............................. CACGCACGTTGGGCAAGCGACTGGCGACCACA 40354 29 100.0 32 ............................. ATGGCGTCGCCCAGACGCCTGAGCCGCAGGTC 40293 29 100.0 32 ............................. CATTTGTTCAGTTTTCTGATTCGAGTCGAGAA 40232 29 100.0 32 ............................. GTGACCCGGTTCTGGCTGTTGTACACCAGCGT 40171 29 100.0 32 ............................. TGTGTAACGCGCCTCGTCTTTCGTGAGTGCCA 40110 29 100.0 33 ............................. ACGGTGGACTGCAGGTAGCGCACCGTTTCGACC 40048 29 100.0 32 ............................. CAGGCCAATGCCACGGTTGCACGTGTTGCATA 39987 29 100.0 32 ............................. CTGACCACGCGCTGGGGCGTTACTGGCGTCTT 39926 29 100.0 32 ............................. TACCCACAGATGCCGACCATCATCCAGTACAC 39865 29 100.0 32 ............................. ACCGGCCTGCGTGTTCCACCAGGTCTGCTTCT 39804 29 100.0 32 ............................. TTCTGGTTCCAGGCGTTGTTGGCCGAGTACTG 39743 29 100.0 32 ............................. GACAAGGGCGACGCTCGAACGGGAAAAACCTA 39682 29 100.0 32 ............................. CGTTTTTCGGCGACACGTTCTTGCAACAAAGC 39621 29 100.0 32 ............................. GCCGCCATGACTGAGCGAGATTTCAATCTGGT 39560 29 100.0 32 ............................. GTCGAGATGGTGCGACTGATGCGAAAGGCCAC 39499 29 100.0 32 ............................. TTGCTGAACGATGCTACCGGGTTCTTTTCCTT 39438 29 96.6 32 ............................T ACAGCATGGGCCATTACCCACAGACCGTCATT 39377 29 100.0 32 ............................. GCTGATCAGCACTTTCAGCGTCTCGGCCAGCT 39316 29 100.0 32 ............................. TACAGCTGCGTCATGCGCTTGGTCTTTTTGTC 39255 29 100.0 32 ............................. ATCATACCGTCGGTCACGTTGCTGATCTGCCG 39194 29 96.6 32 .................A........... CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG 39133 29 86.2 32 ............TT....A.......T.. GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT 39072 29 96.6 32 ............T................ ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 39011 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 38950 29 93.1 0 ........................CT... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.4 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTCTCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGAGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTATTGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGATGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAATCGCCGGCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGCGGTGGAATTTTTTGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : CCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGGCAAGGACACAGCGCGTCCGGGCCGCAGGGTTGGATCAGTCCGCCAGCGCCGCGCGCGCAGCCGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACATCGTCGCTGATCAGGTCTGCCTTGTCGCTCAGGCCGCTGATTTCGCGCAGCTGCGCTACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGCCACCATGTCGGCGAAAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50775-49894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWOR010000014.1 Ralstonia solanacearum strain PD:3222 IPO4018-2017_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50774 29 100.0 32 ............................. CGCATAGCTACGCCATCTCGCGGGCCGACCAG 50713 29 100.0 32 ............................. GCGTTCGCCATGGTCGATGATGAGGACTACGA 50652 29 100.0 32 ............................. CGTCCTTCTCTTGGCCTATGTGGTAAAGCTCA 50591 29 100.0 32 ............................. CATGCGAGCCACCTCGCCAACGGTCGAACCGC 50530 29 100.0 32 ............................. ACTGCGGTTGGTTTCGACGGCAGCAACCTGTT 50469 29 100.0 32 ............................. GCTCTCGACACTCTCGTTTGAATAGCAGACGT 50408 29 100.0 32 ............................. GTCTGGCGCAGTTGCAGCACCGATCGGCTAAT 50347 29 100.0 32 ............................. GAGAACTGCTGATGTCCGACCTGCTCTTCGAC 50286 29 100.0 32 ............................. CCGCCGTCACCGACATCTTCAGGTTGCGCGCC 50225 29 100.0 32 ............................. CAGGTTCCGAAAAACCTTCTTCACGTTCTCGT 50164 29 100.0 32 ............................. TCGCTCGGCGCGCTGGCCGGTCGGAGGTCATC 50103 29 100.0 32 ............................. ACGGGTTGGGCACCGCTGTATGAACACTGGCT 50042 29 93.1 32 .............A..T............ GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC 49981 29 75.9 30 ..A........TCA..T.......TG... CTGCGCCAACAGCTTACCGTTGATCGTGCC 49922 29 75.9 0 .C..C......A..T........C.G..T | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.3 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGTATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACAGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGTAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGAGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : TCAGCCAGCCCCATTTCCTCGATCGTCTGCAGGAAGATGAAGAACGTTCATGGACTAACGCCTTTGCTATCTCATTTGGATCATTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTGTGATCGCCCGTCCGGGAGCGAGCACAGATAGAAATTTCCTGACATCAAGAAAAGGCATCAGGCTGATATGGAAAAAGGGGCGGCGCGATACTTTGCTTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCCGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGATTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGCCCGATCTCGTCTCCC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //