Array 1 122029-124130 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLI010000001.1 Aerococcus urinae isolate Au-20-U84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122029 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 122090 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 122152 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 122213 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 122274 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 122335 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 122396 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 122457 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 122518 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 122579 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 122640 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 122701 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 122762 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 122823 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 122884 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 122945 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 123006 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 123067 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 123128 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 123189 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 123250 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 123311 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 123372 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 123433 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 123494 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 123555 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 123616 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123677 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123738 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123798 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 123859 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123920 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123981 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 124041 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 124102 28 75.9 0 ......-....C.......T.T.A...TG | A [124120] ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 143081-143900 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLI010000001.1 Aerococcus urinae isolate Au-20-U84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 143081 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 143142 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 143203 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 143264 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 143325 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 143386 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 143447 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 143508 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 143570 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 143631 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 143692 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 143753 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 143814 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 143874 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //