Array 1 159072-159893 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRYC01000008.1 Escherichia coli strain 1_14_12 NODE_8_length_222722_cov_20.238640, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159072 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 159133 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 159194 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 159255 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 159316 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 159377 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 159438 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 159499 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 159560 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 159621 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 159682 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 159743 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 159804 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 159865 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185592-186598 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRYC01000008.1 Escherichia coli strain 1_14_12 NODE_8_length_222722_cov_20.238640, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 185592 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 185653 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 185714 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 185775 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 185836 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 185897 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 185958 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 186019 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 186080 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 186141 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 186202 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 186263 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 186324 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 186387 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 186448 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 186509 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 186570 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //