Array 1 62598-63906 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJXS01000005.1 Corynebacterium diphtheriae strain DSM 43989 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62598 28 96.4 33 .................A.......... CGCCCCGGTCATCCGTAAGCACCTCAAAGACGC 62659 28 96.4 33 .................A.......... CTGAAATCTGAGGTTGCGGCGCTGAAATCGCAG 62720 28 96.4 33 .................A.......... GCGATTGAAGCTGAGCGGCGGTGCCGCCCGCGT 62781 28 96.4 33 .................A.......... TGCCAAATTCCAACAAAAATATACCTGGATCGC 62842 28 96.4 33 .................A.......... CCGGAGTCCTTTCCCCATACGACCTCGGCGGCT 62903 28 96.4 33 .................A.......... TAAATTGGGTGCGGTCGAGCATTTTTTCCGTGC 62964 28 96.4 33 .................A.......... TTTCGCTGGGATCGATTCGGCGACCTTCCACGA 63025 28 96.4 33 .................A.......... CCCCGGCATCATCGACAAAGATACTGGCCGCGA 63086 28 96.4 33 .................A.......... CCGCTAAAGCCGATCTCCGCGACTGGGCTATGA 63147 28 100.0 33 ............................ CGTCGAGCCGACCAATTCGCCGCCCAAATACTC 63208 28 100.0 33 ............................ CTCTGGTATAAAACCAGCCCCAGTTAGTGCAGT 63269 28 100.0 33 ............................ GTTCTGGCATTCGACGATACAACATTGTGCACA 63330 28 100.0 33 ............................ GTTCTGGCATTCGACGATACAACATTGTGCACA 63391 28 96.4 33 ......................G..... CTACGAGAGCATTAAGGGGGGCTATTTCTTTAC 63452 28 100.0 33 ............................ CGAACTCGAGGACATGGAGGCCACGCGATGAAA 63513 28 100.0 33 ............................ CCGTGAAGCAGTCACCAAGAACATCGAGAAGTT 63574 28 100.0 33 ............................ CAGTCCCCAGCGGCGGCAATTATCCCAGTTCCG 63635 28 100.0 33 ............................ GTATGAGCTGATTTACCCTGATGAAGATTTCTT 63696 28 100.0 33 ............................ CGCCGGTAGGGTATGCGACCGCCGCGCAGGTCA 63757 28 100.0 33 ............................ GTGGGGTTGATTTGATTATACCGCATGGTGCGT 63818 28 100.0 33 ............................ GTCATAATCAGCACTGTCAATCCTCATGTATTG 63879 28 89.3 0 ...........GTC.............. | Deletion [63932] ========== ====== ====== ====== ============================ ================================= ================== 22 28 97.9 33 GTTTTCCCCGCACTAGCGGGGATGAGCC # Left flank : CTTACTTGGAAAGAAACTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAACCCGAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGATTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAAGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAAGAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CCAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAAGATCA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACTAGCGGGGATGAGCC # Alternate repeat : GTTTTCCCCGCACTAGCAGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //