Array 1 1585411-1584461 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJMWI010000001.1 Mycobacterium riyadhense isolate MR-1023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================================= ================== 1585410 29 89.7 46 .....A......T.....C.......... CCAGCGGCGGCAGCGGCGGCGCCGGGGGCAGCGGTGGATCGCTCTA 1585335 29 89.7 43 ............G.....C.......C.. GTGCCGGCGGCATCGCCGGCAACGGCGGACCTGCTGGGCTGAT 1585263 29 89.7 46 ...............G..C....T..... CCGGACACGGCGTCGGTGGTGCGGGCGGTCAGGGTGGATTGCTCTA 1585188 29 100.0 43 ............................. GCGTTGGCGGCATCGGCGGTCAGGGCGGGGCGGCCGGGCTGAT 1585116 29 89.7 46 ............C.....C..T....... CAGGAAACGGCGACGGCGGTGTCGGGGGCCAGGGTGGATTGCTCTA 1585041 29 100.0 43 ............................. GCGTTGGCGGCATCGGCGGTCAGGGCGGGGCGGCCGGGCTGAT 1584969 29 93.1 46 ............C.....C.......... CAGGAAACGGCGACGGCGGCGACGGCGGCCTCGGCGGATGGCTCTA 1584894 29 100.0 43 ............................. GTGCAGGCGGGACCGCAGGTCAGGGCGGGGCGGCCGGGCTGAT 1584822 29 79.3 241 ...............A..C..A.TG...A GCGGCGGCGGCGACGGCGGCGACGGCGGCAGCGCCGGACTGCTGTACGGCCATGGCGGGGCCGGCGGCAATGGCGGGTCCGCCGCTATCGCCGGCCAAGCCGGCGGGGCCGGCGGGGGCGGCGGGTCGGCGTCGTTGTTTGGTCAGGGCGGTCACGGCGGGGCCGGCGGGACCGGGGCGGCCGGTCAGGCCGGCGGGCGCGGCGGTTACGGCGGTGCCGGTGGGTGGCTCGGCGGCAATGG 1584552 29 72.4 34 ...G.T......T..T..C...GTG.... GGGCCGGCCTCGAAGGCCTCGCCGCCGGAACCGG Deletion [1584490] 1584489 29 69.0 0 T..T.A......CT....C...GC....C | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================================= ================== 11 29 88.4 63 CGGCACCGGCGGAGCCGGGGGCAACGGCG # Left flank : TCGTCGTTTGTGATCGCGACGCCCGGATTCTTGATGGCGGCCACGCAGGACTTGACCACGATTGAGCAGGCGGTTGGGGCCGCCAATGCGACGGCGGCCGGCTCGACGACACGGGTGCTGGCCGCCGCCGAAGATGAGGTGTCGGCAGCGATCGCAAGGTTGTTTGGCGCCTACGGCTACGAATATCAGGCGCTGAGCGTGCAGGCGGCGGTGTTTCACGCCCAGTTTGTGCAGGCGCTGGATGCCGGTGCTCGGGCGTATGCGGCCATGGAGGCCGCCGCCGCCGCGCAGTTGCAGACCCTGGGGCAGGACGCGCTTGGCCTGATCAACGCCAACACCCAGGCGGTGCTGGGCCGCCCGTTGATCGGCAACGGCGCTGACGGGACGGCCGCCCGCCCCGACGGTGGGGCCGGCGGGCTGCTCTACGGCAACGGCGGCAACGGCTATTCCCCAGCGGTAGCCGGCGGTTCCGGTGGTAGGGGTGGGGCGGCCGGGCTCGT # Right flank : GGGCCCTGGTGGGCTGGTCAGGCGGGGCAGGTGGGGCTGGAGGCGCCGGCGGCGCGGGTGCTGACGGGGTCGCGGGTGCTCCCAATACGAGCGGTGTAGGCGCCGCGGGCGGCACCGGTGGCAATGGCGGCATCGGCGGCGTGGGTGGTGCATCCAGTGCGCTGCTGTTCGGTTCCGGTGGTGTCGGCGGTGTCGGCGGTGCCGGCGGGGTAGGCGGCTCGGGCGGCAACGGTCTTACCCAGGTCGGTCTCAATGGCGGCACCGGCGGCACGGGCGGGACGGGGGGTAATGCCGGGGCGGGCGGGGCTGGCGGGGCCGGAGGATTTTTCGGGACATCCGGGGATACGGGCGCCGCGGGCACCGGTGGTAGCGGCGGCGCCGGGGGCAATGGCGGCGACGCCGCGGGAGTGGGCCCGGGCGGCGCCGGTCTACGCGGCGGCGACGGCGGCCAAGGCGGTCAGGGCGGTAGCACGGGCCTCGGAGGCGTCAACGGTAACGGC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCACCGGCGGAGCCGGGGGCAACGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 4240658-4236297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJMWI010000001.1 Mycobacterium riyadhense isolate MR-1023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 4240657 36 100.0 36 .................................... GGGTAACGGCCCCGATCTTCGTCTGGCGTGAGCACG 4240585 36 100.0 35 .................................... GGCGCTTGAGCTGCTGAAATGATGGGTCCTACCGC 4240514 36 100.0 35 .................................... ATCACCAGCGCCGCCGCAGACTTGGCGCGCATCGG 4240443 36 100.0 38 .................................... GAGCGGCATCTGGCACACACCTATTGGGACGAATGCCG 4240369 36 100.0 36 .................................... CCTTAGATGGGGTTGTGCTGGCGTTGATGACCGCAG 4240297 36 100.0 36 .................................... CAGTCATTCTTCGGCATCGTCCCACCACAAGGCCCC 4240225 36 100.0 36 .................................... GGCATGCTCATCCACCCCTGTGTCCAGGGCGTTGAT 4240153 36 100.0 36 .................................... TGCAGCGACATCATCGCTATGTGTTGTGCTGGCCAT 4240081 36 100.0 36 .................................... TAGCGCTGATGGCCGCGGCTTCCGCCCAGCAACCAT 4240009 36 100.0 35 .................................... GTCAACCCGGTCACGATTCCGGTCGGCATCCCCGA 4239938 36 100.0 37 .................................... AGCGACGACGACAACCCGTTCGCGGCCGGATAGCCTC 4239865 36 100.0 36 .................................... GGATGTGCCGGGGAGTCTTCGGTGTTCATTGCGTTG 4239793 36 100.0 36 .................................... GAAACCCCGAACGTCATCAGGGCTTACCAGGTGCAC 4239721 36 100.0 39 .................................... CAGCTTGTACGGCTACATCGACGCAGCACTTGAGGGCTG 4239646 36 100.0 35 .................................... CTTATGGTGGTCGTGATGGATTGCGGCGCAAACAT 4239575 36 100.0 38 .................................... GGCTTCAATCCGCCAAAGCAGTATTCGGCCACCTACAC 4239501 36 100.0 36 .................................... GGACACGTTGCCGCTGTCAACGACGGAACCCATCGC 4239429 36 100.0 38 .................................... AGAAACCTGCGCCGCGCCATCGACACCTCCGTATACGC 4239355 36 100.0 35 .................................... AGGATCATTTCGGGCTTGCCGGTGTCATTGACCGG 4239284 36 100.0 38 .................................... CTGGCAGGGCCGCTGAGCAGACTCCTGGGCGGTCTCCT 4239210 36 100.0 37 .................................... AAGTTCGCCAACGCCCCATTTGGTCTCTCCCGTCATC 4239137 36 100.0 37 .................................... ATCGTGCTCCTGGTGCAGGGGTTCTTGACGGCGGGTC 4239064 36 100.0 35 .................................... CCGCAGTGAGCGCACTGACGCGCGGCCATCAGTGT 4238993 36 100.0 35 .................................... AGGAGCGATCTTCACGGATCACTTGGCCTGAACCT 4238922 36 100.0 36 .................................... GTCGCGAGTCTGGTACCCCTGGGGGGTTTGATTTTT 4238850 36 100.0 35 .................................... AGGATCGCGGCGTTACGGGTGTCCGCCTTGGCCAT 4238779 36 100.0 36 .................................... ATTTCTGCGCGTCGGGTCGCGCACCAGCGCAGGATC 4238707 36 97.2 36 ....................T............... AATATGCCGATTAAGATGACCAAGCACCTCCCGATC 4238635 36 100.0 35 .................................... ATCTGTATCGATGAGCCCATACGTGGACGGTGGAG 4238564 36 100.0 37 .................................... AACATCGGTGTGCGCCATGGCGGGCCGGGCGGTGGGC 4238491 36 100.0 35 .................................... AATCACTGCGGTCGTCTTCAACGACGGCGGCTTTA 4238420 36 100.0 36 .................................... ATGGACTCGATGCGCACCGGCATTGATTTCCAACGC 4238348 36 100.0 33 .................................... CTGATGTCGCTGACAGGGTGCATGTGGTTGCAC 4238279 36 100.0 35 .................................... TAAAAACGAATTTACTACAATTTCTGCCGGTCCCT 4238208 36 100.0 37 .................................... AATAACATGCAATGCCCAGTTTGTGTTGCCGTGCCAA 4238135 36 100.0 36 .................................... AATCAACCCGGCTAAAGCCAGTACGTCGGGGTGATG 4238063 36 100.0 37 .................................... CGATTTTCCGACCTGCAGTGCTACCCTTGGAAACCAT 4237990 36 100.0 36 .................................... TTCCCTACTCCTGTGGCGTTCCAGTAATGAGTGCGA 4237918 36 100.0 37 .................................... AAGGGGCCGCTGGGGCCATCGGATCTATCGCCGCCAT 4237845 36 100.0 37 .................................... CGGAGTTATGGGCGGAGCGGACGCAACGGCGGCCCGT 4237772 36 100.0 35 .................................... TTAATCATAATCATGATTAATTCTATTTGGTATCT 4237701 35 97.2 36 .................-.................. GTACACCCCGAAATTGGATTGCACGTTGAATCGCAC 4237630 36 100.0 37 .................................... AACACCACCGGTGCGGATGCCCGCCAGGACTCCGAGA 4237557 36 100.0 36 .................................... CTGCTCACGCACGCCAAAGGCCGCGCACACGACGAA 4237485 36 100.0 35 .................................... CCAAATTGGAAATTGGTAAGATCGTCGACACCCTG 4237414 36 100.0 36 .................................... ACGTGAAGGCGGGGAGGCGGACGCGGACGTTGTGAT 4237342 36 100.0 36 .................................... AGCGATCTCGTGCTGCGTCCTCCCCAGTGAGGCGGC 4237270 36 100.0 37 .................................... TCGAAGAACCATTTTGCAACCTGTTCACGGGTGAATC 4237197 36 100.0 36 .................................... ACAGCGGGTACACCGTATCCACTTCATTGAGGGTTC 4237125 36 100.0 37 .................................... GGATTCGTTGCCGCGCATGGCCAACGCACTGAAGAGT 4237052 36 100.0 34 .................................... AGAATGTGGCAGGCTGGTCGGAGCGCGTTGGCAA 4236982 36 97.2 35 ..................C................. CGCCGTCCGTTCCGCCGTCGATTCCGCCGTCCGTT 4236911 36 100.0 38 .................................... CGCGACACCTGCACCTGCCCGGACCCCTGGTGTCCCGT 4236837 36 100.0 38 .................................... GGATTCGACGCCGGCAGTGGCCGGCCGGGTGCGGCGAT 4236763 36 100.0 35 .................................... TTCGTTGGGGATGTCGATGATGATGTCGTCACCGT 4236692 36 100.0 38 .................................... GAGCGGCCCGCCGCGCTCTACCGGTACCTGATCAGCAA 4236618 36 100.0 36 .................................... ATGTTTGCCGTCGACGGTGTCGCTGTTGCGGCAGTC 4236546 36 100.0 35 .................................... GAGGAGCATGGTGGCGAGCTTTTGCTGGGCGGCGT 4236475 36 97.2 37 .........................G.......... CAGTCGCCCGGACAGTTTCACTTCGCCGCGCAGCAGC 4236402 35 91.7 35 ...................T.........C-..... TCGCTGGTGTGGATGTACAAGTGACGGTTGTCAGC 4236332 36 83.3 0 .........A.....A...TG...........TC.. | ========== ====== ====== ====== ==================================== ======================================= ================== 61 36 99.4 36 GTTATTCCGGTCATTTTGGCCGGACACCATTGAGGC # Left flank : CTCGTCGGTGAGCTGCCTGAGTATGTCCCAATGGTGACGAGATGACGCGACGTCGGTACTTGCTGGCATACGACATCGCCGATCCCAAACGACTGCGACGAGTGTGCAACCTGATGGAGGACCACGGTGAGCGACTGCAATATTCGGTATTTCTATGCGACCTCAGCGTTGCGGAGCTATCGGAACTTGAAGCCGCCGTGACCGCTGTGATGCATCTCGTCCAAGACAGCGTCGTCCGAATCGACCTAGGCCCCACGTTTTCAGCAGCTACTATACGACAGATCGGTCGTCGCCGCTGCCTTCCTACGGACGGGCCGCAGATCGTATGAAGCTGCGAGCGGCCATATGAAGGGGCAGATCCGGGGCAGCGCTCGCGGCCTGGTGGGAGACGTTGCGGTAGACGCAGCACCTGACCGTCAAACGCGCCGCAGATGCTGGAACCTTCACCGCTCGCGGTGTCGTGTATTATGCCAGGTCACGGGGCTGTAATTGATCGAGCC # Right flank : ATTAGTTGGCGGTCGGGATCTTTACCAGACGAGATACATTATTCATGGCTGCCCGGGTCCGCAGCGCCGTCGGGTGATCCGACCGGTAACAACACCCGCGACTGTCCGAAATGCACCGCATGGGTTGCCGGCTTCACCTGCCGGCCGGTCCCGAGTTAGGACAATTTAGTGTGCATGGCCGCCATTGATCTTGGCGATGACGTCGCGGAGGTCATCGGGTAGCGGGTCGACAGCGGTCAGGATTTGCCTGCCTGCTTTGATCTGTACGGTTCGGAAGCGGCGTGCGGTTCGTACGAATTTCTTGATGCTCCAGCCGGTTTGGGTCTCGATGTAATGACTGACGGCCAGGGCGGCGAACACGATGGTCAGGTGAGCGTCGATGGATTCGCGCTTGTGGTGGTAGATGGGCCTGGCCTGCAGGTCGTGCTTGGACATCCGGAAGCTCTTCTCGATGCGCCAGAGCTGGTGGTAGGCGCCGATGACGAACTCCGGTTTCTGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCCGGTCATTTTGGCCGGACACCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //