Array 1 429303-430489 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRN01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1548 NODE_2_length_649162_cov_40.859_ID_3156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429303 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 429364 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 429425 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 429486 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 429547 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 429608 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 429669 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 429730 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 429791 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 429852 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 429913 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 429974 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 430035 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 430096 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 430157 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430218 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430279 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 430340 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 430401 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 430462 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446660-448339 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRN01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1548 NODE_2_length_649162_cov_40.859_ID_3156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446660 29 96.6 32 ....C........................ AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 446721 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 446782 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 446843 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 446904 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 446965 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 447026 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 447087 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 447148 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 447209 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 447270 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 447331 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 447393 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 447455 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 447516 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 447577 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 447638 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 447699 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 447760 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 447821 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 447882 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 447944 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 448005 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 448066 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 448127 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 448188 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 448249 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 448310 29 93.1 0 A..............A............. | A [448336] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //