Array 1 16741-18100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGNT010000031.1 Pseudomonas aeruginosa strain 3734 scaffold_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 16741 30 100.0 37 .............................. ATTGAAGACGAAGTGTTTGACCAGGTGCTGGACATGT 16808 30 100.0 36 .............................. TCCATCGCCATCCAAGTAGTCTGAAAGGGTGGCCGT 16874 30 100.0 35 .............................. GCAGCCAGGATCTGCGCCTCGTAACCGATCCGCGT 16939 30 100.0 37 .............................. ACATTGATCGGCGACGCGGTACCGTTGTTGAACGTGT 17006 30 100.0 36 .............................. TGGAACTGCCGACTACTCGGCGGCGAAAGCACTAGT 17072 30 100.0 36 .............................. AATGACGCACTCGCCGGCGCCTACAGCTATGTCCGT 17138 30 100.0 36 .............................. TTCGCGTACGCCGGGTTGTGCACTTCCGGCGGGGGT 17204 30 100.0 35 .............................. TATTACGGTTCTGGGTGCAGCATCTGCGGGGGTGT 17269 30 100.0 36 .............................. ATGATGCCATATTCGTGCTGGTTCCCGGTACACAGT 17335 30 100.0 37 .............................. CAGCCGTTGAGAAACGAGCTTGGAGTCCATGACGTGT 17402 30 100.0 37 .............................. TCATGCTGGAACGCCAACGATCCGAACGCTCCATAGT 17469 30 100.0 37 .............................. GTGTTCCAGAGCCTGCTGGCCCGCGCCCGGCACCTGT 17536 30 100.0 35 .............................. TCGCCCTGGAGCGTGAGCCTGGTTGGTGGATCTGT 17601 30 100.0 38 .............................. GTCAGCAGCCGGGCCTGGAGCGTCACGCCCTGGCTGGT 17669 30 100.0 37 .............................. TCCGCTACCACGGTGGCAAGTGGCTGCTCGCCCCGGT 17736 30 100.0 36 .............................. CTCAAGGGGCTGAGCGGCATGGTGGTCCTCTCCGGT 17802 30 100.0 37 .............................. ACTGCGGGAACCGTCAATGGCGCTGGTCAGACTGGGT 17869 30 100.0 37 .............................. GGCGAGCAGTCTCGGCAGGAGTCGAGTATCCAGGCGT 17936 30 100.0 38 .............................. AAAAACGCTCAGATCAAGCGCTATCGCGCTCGCCTGGT 18004 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 18071 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.2 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : TTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGGGGTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAGGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGATCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 317-944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGNT010000008.1 Pseudomonas aeruginosa strain 3734 scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 317 28 100.0 32 ............................ CGGCTACGCGACCGGCACCAACAGCGCCGCGC 377 28 100.0 32 ............................ AGCGCCTGGCCGAACTGGATCACCCCGTTCTC 437 28 100.0 32 ............................ ACGAACGAACAGTTTTTTCAGGTTTTTCATAG 497 28 100.0 32 ............................ ACATGCCCGAACACAGGGGCGCCCCATCCGGC 557 28 100.0 32 ............................ AGAACGAGCCCCGTGTATCGGCTTTGGACTCA 617 28 100.0 32 ............................ TTTTGGACAGGCCGAGGGGCCGTATCGACGGT 677 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 737 28 100.0 32 ............................ TCGATCACAGCAAGCCCTACCTGACGGTCGAT 797 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 857 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 917 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAACAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //