Array 1 849024-849389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058741.1 Streptococcus suis strain 13-00283-02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 849024 36 100.0 30 .................................... AATAAAACTGCCATACACTGACAATTACTG 849090 36 100.0 30 .................................... AATAAAACTGCCATACACTGACAATTACTG 849156 36 100.0 30 .................................... GTTTAGTGGCGATATTATCTTCGGAAATTT 849222 36 100.0 30 .................................... GTTTAGTGGCGATATTATCTTCGGAAATTT 849288 36 100.0 30 .................................... TTGCAAAAGTTGCTAGCATACTAGGGTTCT 849354 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : CAAAGAAGAAGACCAGGTTGCCATTGCAATGTCATTAAGTTAACTAACCTATCACGTTTTGTGGTGGGTTAGTTTTTATGTTACACTAAAAATAAAAGGGGAAAAGTCATGCTAGATCAGATTAAAGCTCATTTACTTGATAGTATTAACGACATCGTTTCTAGTGCCAATCAGTTTGTGCTTCATCCTGAAAAAGATTTTAGTCGGCAAAGTCAGCTAACTATGAAAACCATGATTCAAGCCATACTGACCATGGGTGGTAATACCTTAGCCAAAGAGCTACTTGATTTAGATTTGCCTGTCTCTCAATCTGCCTTTGTTCAACGACGGTATCAGATTAAACACCAAGCTTTTAAAACACTTTTTAGGGATATTACTTCTAAAATTCCAATCTCTGATAATCTCCCTATCCTGGCTGTTGATGGCAGTGATGTGATTCTACCAAGAAATCGTTTTGATAAAACGACCTCTTTTCAAACTGGACCACATCACACTCCTTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1351286-1350524 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058741.1 Streptococcus suis strain 13-00283-02 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1351285 36 100.0 30 .................................... CAATGACGATCTGAGCAACATCTGCCTGCT 1351219 36 100.0 30 .................................... TCACGAATTGAGCCAGTGCCAACAGCACCA 1351153 36 100.0 30 .................................... TTTAGAAAATGAAAAAGAAGAAACAGATGA 1351087 36 100.0 30 .................................... TCAATACGTGACGTATATTTCATAGGTTCG 1351021 36 100.0 30 .................................... GGGAAGTCGTGTATATGACTTTTTCACACT 1350955 36 100.0 30 .................................... ATTGGTTGGGTCCCGATAAACAAATGATGT 1350889 36 100.0 30 .................................... AAAGAAGAAGACCAGGTTGCCATTGAGACC 1350823 36 100.0 30 .................................... TAATTATCTCTTTGGACCGCATCGTGGCCA 1350757 36 100.0 30 .................................... TAGTAACAAATAAAGAAGTAAAAGAGGAAA 1350691 36 100.0 30 .................................... CACTTCCTTACGCTACTAATTTTCAGTTAA 1350625 36 100.0 30 .................................... CTTCTGGTAGTTATCCCCATAACATTTGTA 1350559 35 83.3 0 .......................T..T.-....TCA | T [1350535] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : GGGGCATAGAGACCAGTTTTCGTGACCTAAAATACAGTATCGGTCTGACTCATTTTCATGCAAAAAAGAAGGAAGGGATTCTCCAAGAAATCTACGCTCGCTTTATCAATTTTAATGTTTGTAAATGGCTAACCTCACACGTTGCTATTAAAACATCAAAGTTAAAACAGACTTATAAAATTTGTTTTTCAGACGCTGTTTATGCCTGTCGAAAATTTCTTAGAAACAAACTCACTTCCTTCCAATTAGAAACCTACATTGCCAAGCATTTATCCATCATCCGACCCAATCGAACGTTCCAAAGAAAGATAAAAAGCAAGGCACCTGTAAGCTTCACTTATAGAGTAACATAATAGTTGAAAAATAGGGATAAAAAACCTCCTTTTTGTGCGCCCTAAATACAAAAACTATTCCCGTTTTGTCATGAACTGCTCAGACGAGAATAGTTTCTTTAGCTGCTTAAATGCTTAACTTAATGACATTGGGTTGCCATTGAGACC # Right flank : TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //