Array 1 115880-116971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUW010000010.1 Listeria seeligeri strain FSL L7-0952 NODE_10_length_122348_cov_112.606284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 115880 36 100.0 30 .................................... GCTACTTATAAACATGCTTATACAGATGAT 115946 36 100.0 30 .................................... GTGCAGCATCTAGTAACTCCGTGATGGCAA 116012 36 100.0 30 .................................... TCTTTTGGATAATCCTCTAATTTGGCAATA 116078 36 100.0 30 .................................... TTCGCTTCCGGCACGGCCACATAAATGTAA 116144 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 116210 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 116276 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 116342 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 116408 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 116474 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 116540 36 100.0 30 .................................... CGTCGAATTTGTCATTATTCGGTCGTCGAA 116606 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 116672 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 116738 36 100.0 30 .................................... AATTTAGCAAACTTTTTGGCTTTGACCATT 116804 36 100.0 30 .................................... GTTCCCCTATCTGTTTTAGTGCCTTCTCTG 116870 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 116936 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAATAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 40580-39058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUW010000003.1 Listeria seeligeri strain FSL L7-0952 NODE_3_length_254496_cov_99.572787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 40579 29 100.0 36 ............................. ACAAATGACGGGCGATATACCTACACCGATGGAAGC 40514 29 100.0 36 ............................. AACTTCGACAGTATCAAATAACGCAACCTGCTCAAG 40449 29 100.0 36 ............................. TAAATAGCTAACCAAGATACACGCAAATTGATGGCT 40384 29 100.0 34 ............................. TGGGAATATACTAAGCGGTTATGACCAACTGCTC 40321 29 100.0 36 ............................. CATTTTGTCCTGCTCTGATATCAGTTGATACGCATC 40256 29 100.0 34 ............................. TGTCTTTTGTAGTTAATCCTATTACTTCGCCACG 40193 29 100.0 37 ............................. ACAAGAATAAGGCTCTTGCCTATGCCATCGTAGGGAA 40127 29 100.0 37 ............................. ACCAAATAATGGTATATTGTCCTCGTCCGCTTTTTTA 40061 29 100.0 36 ............................. CCTTGTCCAGAGCATCTTCTAGCAAGTCGAAAGATT 39996 29 100.0 35 ............................. GGCGAAGTATACACCGTAATAGCGGCAGTTAGTGC 39932 29 100.0 36 ............................. TTATTACCTTTTGCGGTATTGTATTTCTGTGTACCC 39867 29 100.0 35 ............................. TTCTTTAATTTGATGTCAAACACATCATCGTCAGG 39803 29 100.0 36 ............................. TATCTTGTACGGAATCAGTAGCATAATGTTCAAAAA 39738 29 100.0 35 ............................. ACGTTATTGGCTATATCTATGATCCATCCGTGAGA 39674 29 100.0 35 ............................. GGCGAAGTATACACCGTAATAGCGGCAGTTAGTGC 39610 29 100.0 36 ............................. TGATTTCAGTTATTTTCTGCATATCGTTATAGAACT 39545 29 100.0 37 ............................. ATTTGTCCATCTTCTTCTAATAATTCTCGAATAATTT 39479 29 100.0 36 ............................. GGTGCTACATGCATTGGTTCATTTAAAGCATTTAGT 39414 29 100.0 37 ............................. TTTTTTGTCGGTCGCGATGAACAAGGGTTCTTTTTTT 39348 29 100.0 37 ............................. TAGTTCCTAGTTCTCTTTTTTCATCTGTAGTCAAAAC 39282 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 39217 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 39152 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCTGGTGCGCCCC 39086 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 24 29 98.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAGCGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCGTATGAGACAGCGGTGCAACAGTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 51897-50383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUW010000003.1 Listeria seeligeri strain FSL L7-0952 NODE_3_length_254496_cov_99.572787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 51896 29 100.0 34 ............................. AAAAGCCTTCGGTATAGCTCGCTTTCAGATTTTC 51833 29 100.0 36 ............................. ACACAAGTCTTGTATTTTCGATTAACTCTTCTCCTT 51768 29 100.0 35 ............................. GAAATTGACAAATACCGTTTCACTAAACTAGCACA 51704 29 100.0 35 ............................. AATACTTGGGTAAACTGGGAATTCATTGCATCGGC 51640 29 100.0 34 ............................. TCTGGAAGCGTCGCTAAGGTGCTTTGTAGCAATG 51577 29 100.0 37 ............................. TTAATAAATCTTTCGCTGTAATGGTACCATCAGCCCC 51511 29 100.0 36 ............................. TCCTTTATGGCAATGTAGTTATTTACGTCTTTTTGA 51446 29 100.0 37 ............................. TTTAAATGAAAATCGTTTTAACAAAGTACGCACCTCG 51380 29 100.0 33 ............................. GATATCGCTTAACAAGTTGTTTTTAATATTTAT 51318 29 100.0 35 ............................. ACAGTAAAAGGAATTGCAGAAAAATTCGGAGGTTT 51254 29 100.0 36 ............................. AAGCATGCAGTACCAAAACAGACATTGCTTGACGAA 51189 29 100.0 35 ............................. ATATTTTTCGATGGGGAACCGATAGCGATGACAAC 51125 29 100.0 37 ............................. GAAGGGGGTAGCGCTGGGAGACAGTTGTTGTTACTGC 51059 29 100.0 35 ............................. TTTTACTGACCTCGATTCGCTTTTAATTTTTCACC 50995 29 100.0 37 ............................. ACAATTAAAGCATGTGGGGTCTTAGCAATATTCCAAC 50929 29 100.0 36 ............................. ACCGTAATTAATAAAGGCAATGCCGCAATTATGGCA 50864 29 100.0 35 ............................. ATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTT 50800 29 100.0 36 ............................. TCGATTAGCGCAAATATAAGCTTCACACCTGCGTCA 50735 29 100.0 35 ............................. TCGTGATAAACCTTTATCACAAAACCGCCATCGCT 50671 29 100.0 35 ............................. CCCATTAAAATAGCAGAAAACAGCACCGCAAATGC 50607 29 100.0 36 ............................. AAAGTCTTTCGCAAAGTGTGCGTCCCCACGCGATCA 50542 29 100.0 38 ............................. CGAGCTATTGTATCATTTTTGAAGTAATCTAGCTATAA 50475 29 96.6 34 ........................C.... AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 50412 29 86.2 0 ........C....C..A...........G | T [50385] ========== ====== ====== ====== ============================= ====================================== ================== 24 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAAAATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGTGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGGGTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAACCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAAAAAACACTAGTATTTTCAGTGTTTTTTTTTTCGCTAGCATTCACTCATTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 58805-58131 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUW010000003.1 Listeria seeligeri strain FSL L7-0952 NODE_3_length_254496_cov_99.572787, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 58804 29 100.0 37 ............................. GTGCCCTACATTGAGAATCACCAGGGAGGCGGGCACT 58738 29 100.0 37 ............................. AAAATGGACTTTAAAACAAATCCTGTTCGCATGTACA 58672 29 100.0 36 ............................. AGTGAAGGACATGCCCACATGGATGCAAAAAGGATG 58607 29 100.0 36 ............................. TGATACACAGCCTACTAATGCAGCTATTATCAAAAC 58542 29 100.0 34 ............................. TAATTTGTTCGGCTTTTTCAGCTCGTTGTTGTGC 58479 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 58416 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 58352 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 58288 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 58224 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 58159 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAATGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGTATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //