Array 1 369-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLY010000073.1 Desulfovibrio piger strain An401 An401_contig-110_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 368 36 100.0 30 .................................... GTATCCTGTCGAAGATCGTCAGTTCCCGAT 302 36 100.0 29 .................................... TCTACAACTACCAGTTCGAACACCTTTCC 237 36 100.0 30 .................................... CTCGCTTGAATCTGGTGAGGATACGACAAC 171 36 100.0 30 .................................... TGGCTGGCCAGCTGCTCGACGGTGAGCGTT 105 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 AGATTAGCAGAGGGAAATTGGGAGGGCAACCACGGC # Left flank : CGTGCGTGCCTATTATGCCGAAAAAGGGCCTCTACCGCCCTTTCCCCAGCTTGGGGAATAAGGGGGGAGCATGCCCGCGGAAGAGGTGCGATACATGCGTTTGCTGGTCTTTTTCGATCTGCCGGTCAAAACAAAGGATGACCAGCGGGAGGCCAACCGCTTCCGCAACTTTTTGCTGCGGGACGGCTATGACCGGGTGCAGCTCTCGGTCTATGCCCGCGTTTGCCGGGGCCCGGAAAATGTGGAGACCCATATCCGGCGGCTGCAAAAGAACCTGCCGCCGCACGGCTGTGTGCGCCTGCTGCAGGTGACGGAAAAACAGTACGGCCGCATGAGATTGCTGGTGGGGGACATGCCGGTCATGGAAAAGGAGGCGGCCACGCAATTGCTGCTTTTCTAAAAAGTGCTGCCCATACAGCGCCCCATACGGAAAAACCTTGTGCTCTTACCGGGGAAAATCACTGTTTTCTCCAGTAAAAACACAAGGTTTTCCATTTTCC # Right flank : CACGCCAGACGCCTACAGCCGCGCACAGACCCGTATAAGCGGTTTTTGGCGGGGAGGATGGGGGTACGGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGATTAGCAGAGGGAAATTGGGAGGGCAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 35733-39323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLY010000002.1 Desulfovibrio piger strain An401 An401_contig-110_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 35733 33 97.0 34 ................................T CTTTGCCCTGCAAAAGGTTGGCCGAGGAAGAGGC 35800 33 97.0 34 ................................G CTCTCGCATTACAAACTGGCTTCTCTTCGCATGG 35867 33 100.0 34 ................................. TCAAAAAACCGCCGATAGCGGTTAGTGCGCATGG 35934 33 100.0 35 ................................. TCAAAAAACCGCCGATAGCGGTTAGTGCGCATGGC 36002 33 100.0 33 ................................. GGCTGATGAAATGAAACTCGCATTTGTACTCGC 36068 33 97.0 35 ................................A GCCAACTGCATCCTCACCCTGTCGAATACCGTCAG 36136 33 97.0 34 ................................A ACGTGAATTTGCGTTGATGTCTCGTAAGCCTGGT 36203 33 100.0 35 ................................. AATCAGTTGCATGGAAGTACTTCCTGGTGACACTT 36271 33 100.0 34 ................................. TACGATGATGGCAGGTCTCCTTATGAGGAAGATG 36338 33 97.0 34 ................................A TCTCCTGATGATATCGCTCGACGATACGACGGAG 36405 33 100.0 35 ................................. GGATTGCCGGACTGAAAGTTAACGGCCAGCGTACC 36473 33 100.0 33 ................................. AGAATCAATCTACATGTCCAAATTCTCCGACGA 36539 33 100.0 33 ................................. AGAATCAATCTACATGTCCAAATTCTCCGACGA 36605 33 97.0 36 ................................T CCCGAATCGATGACGGAAAATACCGCCGAGTAAAAG 36674 33 97.0 35 ................................G GAACTTAACCCTTTAACTTTTAGGAGTATTTATGG 36742 33 97.0 33 ................................A CTACGGCCCGCCCGTGGCCCCAGAAAGGTCCGG 36808 33 100.0 35 ................................. CAGAGGCCCCGGTCGTCGATGATCGGCATGGCTTC 36876 33 97.0 33 ................................G ATCGCAAGGATATAAGCATAGCGATGGAACGCA 36942 33 97.0 33 ................................T CTCCCAGTATGATTACTGAAGGGGCTACGGGCG 37008 33 100.0 35 ................................. AGGCCAGCATCGCGGACAGCGTGCACCGCCTGCTC 37076 33 100.0 35 ................................. CTGTGGCCAGTGTCTGGCTTGTAGAATCAATAAAC 37144 33 97.0 33 ................................A GGGAATAGCGTGAGCTGCTGCCCCACAGGCTGC 37210 33 97.0 34 ................................G ACCTTGAGCAGGCCGAGGCCTTTATGGCGGCCAA 37277 33 97.0 33 ................................A TCAGGAGGTCATCACGCGGGATATCCGTATAGA 37343 33 97.0 34 ................................A AGCGCACACTGGACGATTACATGGAGCGCCTTGC 37410 33 97.0 35 ................................T ACGTCCGCATGGAGCACAGCCAGATAGAGGCCATC 37478 33 97.0 34 ................................A AGGTTCTTGCCCGGCAGCACGACAGCCTTATACG 37545 33 97.0 36 ................................T ACGAGGAATTGGCCGACCTTTCAGGGGACTATGGGC 37614 33 100.0 34 ................................. AGCGTCTTGCCCTGTTCGGTCGAGATTTTATTGG 37681 33 97.0 34 ................................A AGGACGTTGCTGTAGAACTGTTTGATACGGTAAC 37748 33 97.0 33 ................................G CGACCAGTGGCGGTGTGTGGCGATGCTTGCCAA 37814 33 100.0 33 ................................. CCCGTCGTCTGCGCGAAAATAGCACGCTTAAAA 37880 33 97.0 34 ................................T AGTATGGTATGGAAAATGCCGTGAGGGAATGCCA 37947 33 100.0 34 ................................. AGGTCCTGGTCACGATAACATTCATTGTACAGGA 38014 33 100.0 32 ................................. AGATATAGCCGCAACACGCGAGCAGCAGCCCC 38079 33 97.0 34 ................................T GGTCCTGTTCGCCGTGTTCCGCGACAACAACCGT 38146 33 97.0 35 ................................T GTGTTGTGAGCATTTGCGATTATATATGACCTTGG 38214 33 100.0 35 ................................. GGCAGGTGCAGGCCCTGCGCATCGTTTTTGACGGC 38282 33 97.0 35 ................................T CGGCCAGCAGCCTGTCCACCTGCACCTTGTTGAGC 38350 33 100.0 34 ................................. CAGATGGATTCCAGCCCCCGGAGCGCCGCGTCAT 38417 33 97.0 34 ................................T CTTCAAGCATCATGCGAACACGGTCAAAAACCGT 38484 33 100.0 35 ................................. GCAAAACGTTGGAGAGCAAAGGCCTCACGTAAAGA 38552 33 97.0 34 ................................A GGATCTGGCGGATGCCGGTCTCCAGCTGGGCGGT 38619 33 97.0 33 ................................A CGGCAGCCATTGAATCCCCCGCTGGCGTTCGCC 38685 33 97.0 35 ................................A TCGTGGCGTGGATGGACGTGGCGACCCTATGGCCA 38753 33 97.0 35 ................................T TTCCGAGCCGCTTCAAGAGCTTCTTCCATAGGAAC 38821 33 97.0 33 ................................T GGTAGCCAAAGACCGTATCATCAGAAGTAGGGC 38887 33 97.0 35 ................................G TGCCAGCATCAATCTTTGCCTTATTCGCAGCGCGC 38955 33 97.0 35 ................................G ACGTGTCTGTGCCGGTTAACCTGACGGCTGCTGGT 39023 33 97.0 33 ................................A AACCTCAACCGCGCTATCCGTGGCACGACCGGG 39089 33 97.0 34 ................................T CGAAAAACAAGGAGGCTACTTTGACCGTCAACGA 39156 33 97.0 36 ................................A ATGTCAGGGTTGTCCGCGAGGAACGACAACTTCCAG 39225 33 97.0 34 ................................T GAGCACGCTCAGCAGCAGTGGATTTAGCATCCAC 39292 32 90.9 0 ......................-........TA | ========== ====== ====== ====== ================================= ==================================== ================== 54 33 97.9 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAACC # Left flank : GAAGCCTATCCCCCCTTTGTCGTGAGGTGATCATGGTCGTCCTTGTCAGCTATGACGTGAATACACAGGATGCCGCAGGCAAACGCAGGCTGCGCCGCATAGCCAGGCTTTGCACCAGCTGGGGGCAGCGGGTCCAGTTTTCTGTTTTTGAGTGCCTGCTCGATAATGCCCAATGGCAGGTCTTGCGTGCGCAGCTCCTGGACGAGATGGACCCGGAACGGGACAGCTTGCGCTTCTATTTTTTGGGGAACCACTGGCGAAGCAAGATAGAGCATATCGGCGTCAAGGCAGCCTACGATCCGGAAGGTCCGCTGATATTCTGATCGAGGACCTCTATGGGGCGTCTTTTCCCGGCAGGATATCGATACCTGTTATATATTGATATCATTAAAAAATATATTTCCAGTTTGAAAAAACGTCCTGCCTTTGACCTGAATCTTTTTTCATCTTCGAAAAGGATTTGCTAATCACGGGAATCTACTGGATAAAACATGGAAACA # Right flank : AGGGAGGCTCGAGCGCAGTTGCAAGCCCGCATGTCATGACGCTCCGTTGCGGATACATGACTTGAAGCTCCCTGCAAAAACGTACCCGAAAGCTGGCCTAAAACAAAAAAGCCCTCACGGAGATTTCCGTAAGGGCTTTTTGCTTTTTCCTGGAGCTGGTGAAGGGACTTGAACCCATAACCTGCAGATTACAAATCAGCTGCTCTACCGATTGAGCCACACCAGCATCTCTCCTCTTTTAGATGAATCCTGACCGCTTGGCAAGGGCTTTCGCACAGGGGGCTTTTCACCGGCCGGCTCTCCTGCCTCAGCATATGAAGGACAGCAGACGGCTCTTAAGCGGCTAGCGCTCTGCCGCTGTCAGCACGGGGACGAGCCCTTCCCGGCCGCAAATAGCCAGCGTCAGATGCTCCCGGGCGCGCGTCATCCCCACATAGGCCAGACGCCGCTGGCGGGGCTTCTCCGGCTGGAGGCGATCCATGCCCAGCAGGAAGACATGG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //